Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq586 152 2e-32 >seq586 Length=22678 Score = 152 bits (168), Expect = 2e-32 Identities = 332/494 (67%), Gaps = 15/494 (3%) Strand=Plus/Minus Query 64830 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 64889 |||| |||||| || |||||| || | ||| | | ||||||||||| || ||||| ||| Sbjct 14458 GCCTTCATCGATGCAGAGCACGCCATTGACGCCCACTACGCCAAGGCCCTGGGTGTCGAC 14399 Query 64890 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 64949 |||| ||| || ||||||||| | || || | || |||||||||| |||| Sbjct 14398 ATCGATGCCCTGTACGTCTCGCAGCCGGACTCCGGAGAAGAAGCTCTGGAGATCGCTGAC 14339 Query 64950 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 65009 ||| || || || | | || |||| || | ||| |||||||| || ||| Sbjct 14338 ACGCTCATCCGATCGGGAGCGGTGGATCTCGTGGTGCTGGACAGCGTGGCGGCTCTTGTG 14279 Query 65010 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 65069 ||||| || |||||||| || || || || ||| || | | ||||| ||||| ||| Sbjct 14278 CCGCGTGCAGAGCTCGAGGGTGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGTCTC 14219 Query 65070 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 65126 ||| || || |||||||| | || || | | |||| |||| ||| | | Sbjct 14218 ATGAGCCAAGCGCTGCGCAAGTTGACTGGATCGCTGTCCAAGTCCAACTGCACCATTA-- 14161 Query 65127 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAG 65183 ||| | |||||| | ||| ||||| | || ||| || ||| |||| ||| Sbjct 14160 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGG---CGTCATCTTCGGGTCCCCG---GAG 14108 Query 65184 ACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGC 65243 || ||||||| | ||| ||| | | |||||| || || ||| ||||| |||| ||| Sbjct 14107 GTGACATCGGGCGGTACGGCGTTGCGCTACTACGCGTCGGTGCGCCTGGATATCCGCCGC 14048 Query 65244 ATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTC 65303 | | || ||||| || || || |||||||||| || ||| ||||| | | Sbjct 14047 AAGACAGCCATCAAGGAGGGTGACCAGATTGTCGGCAACGAAACGGTGGTCAAGGTGGCC 13988 Query 65304 AAGAACAAGCTGGC 65317 |||||||||||||| Sbjct 13987 AAGAACAAGCTGGC 13974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237331588265407