Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1233 197 1e-45 seq312 100 3e-16 >seq1233 Length=11135 Score = 197 bits (218), Expect = 1e-45 Identities = 569/862 (66%), Gaps = 25/862 (3%) Strand=Plus/Minus Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCA 147524 |||||||| ||||| || ||| ||| |||| || || |||||| || || ||| ||| Sbjct 7351 GACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATGACCTCGCAGCA 7293 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 || |||||| | ||| |||| || ||||| ||| || || ||| |||||| Sbjct 7292 CAAGTTGCTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTC 7233 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AACCTATG 147641 ||| | |||||| | || | || ||||||| || | || | ||| |||| Sbjct 7232 CTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGAACCA--- 7176 Query 147642 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 ||| | ||| || | || || |||||||| | |||||| |||||| | Sbjct 7175 CAGCTGCTGGGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGTACTTCTCGTAGAG 7116 Query 147702 CCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 |||||||||||| || |||| ||| || |||||| | | || || | ||| Sbjct 7115 GGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGTTGGGGCAGAACAG 7056 Query 147762 CGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 ||| || | | | | || | ||| || ||||| || ||||| |||||||| Sbjct 7055 GCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTA 6996 Query 147822 CATAAGATCGCGCGCTT--TGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT--AAGCA 147877 | || |||||||| |||| |||| ||| ||| | | | | | | | Sbjct 6995 GAACAGGTCGCGCGCCCGGTGCAG--CTCGTTGCCGTGGTT-CTTGCGGAGGTCCAGGAA 6939 Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTC 147937 | | | | | |||||||||||| || || | ||||| ||| | || || || ||||| | Sbjct 6938 CTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGC 6880 Query 147938 CGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994 |||| |||||| || | |||| || ||| ||| |||||||||| |||||| | | Sbjct 6879 CGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCC 6820 Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054 | | | | |||||| ||| ||| | |||| | ||| || | | ||||| | Sbjct 6819 CATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGC 6760 Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---TGTCGTGT 148111 | | ||| ||||||||| | |||| || ||| ||||| | || | |||||| Sbjct 6759 TGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTGTCGT-- 6703 Query 148112 AGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAA 148171 ||||||| |||||| ||||| | | | | |||| || ||||| ||| |||||| Sbjct 6702 AGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGAC 6643 Query 148172 TCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCA 148231 | |||| || || ||| || ||||| |||||||||| || || || || ||||| | Sbjct 6642 GCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGAACTTCTGGCTCATGA 6583 Query 148232 TGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCA 148291 |||||||| | ||| | | ||||||| | ||| ||||||||||| ||||||| Sbjct 6582 GCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTTGTGGATGCCCAGCGCCACGCGCA 6523 Query 148292 TGAGCATGTGCTGTGGTCGTTC 148313 ||| ||| ||||| || || || Sbjct 6522 TGATCATCTGCTGCGGCCGCTC 6501 >seq312 Length=34779 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 25100 ACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 25041 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || || | |||| || ||||| || || || || ||||| Sbjct 25040 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCC 24981 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 24980 CTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 24921 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || |||||||| || | ||| ||||||||| Sbjct 24920 CGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24878 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || ||||||||||||| || || || || ||||| || || | Sbjct 24616 GACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCG 24557 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || |||||| || |||| Sbjct 24556 AAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACG 24497 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || |||||||| || Sbjct 24496 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTC 24437 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 24436 ACGAAGATCTGCATG 24422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || ||||||||||||| || || || || ||||| || || | Sbjct 24844 GACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCG 24785 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || |||||| || |||| Sbjct 24784 AAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACG 24725 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || |||||||| || Sbjct 24724 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTC 24665 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 24664 ACGAAGATCTGCATG 24650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || ||||||||||||| || || || || ||||| || || | Sbjct 24388 GACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCG 24329 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || |||||| || |||| Sbjct 24328 AAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACG 24269 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || |||||||| || Sbjct 24268 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTC 24209 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 24208 ACGAAGATCTGCAT 24195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476579046616920