Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq844 100 3e-16 >seq844 Length=16701 Score = 100 bits (110), Expect = 3e-16 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| |||||||||||| ||||||||||| ||| ||| |||| ||| | ||| Sbjct 10433 CTCGAGGATGAGCTGCGCTACGCGGTCGCCGCGCTTCACGGGGAAGTCCTC--GCTCGAG 10490 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||| || | ||| |||| ||| || ||| |||| | ||| | |||||| || ||| Sbjct 10491 TGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCTGCGTCGATGACGCCTGCGCCC 10550 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCG 5517 || | ||| || || |||||| || || | ||||||||||| ||||||||||| Sbjct 10551 GTGTCGATGAACTTCTTCCACGCGAGGCCCGAGCGAGGCGCCACGCGCGCGTAGCAGCCG 10610 Query 5518 T 5518 | Sbjct 10611 T 10611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447780989536920