Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq41 289 3e-73 >seq41 Length=78637 Score = 289 bits (320), Expect = 3e-73 Identities = 473/666 (71%), Gaps = 14/666 (2%) Strand=Plus/Minus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || || ||||||||||| || || ||||| || || || | | ||| | ||| || || Sbjct 49129 AGCGGTTCCACGTGGTTCAGATACACGTGTGCATCGCCTATGACGTGGATAAACTCGCCA 49070 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038 ||||| || || ||||| || || || | || | || || |||| ||||||||| ||||| Sbjct 49069 GGCTTCAGTCCAGTCACCTGCGCTACTA-GTCGCGTTAGAAGCGCGTAGCTGGCAATGTT 49011 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| ||||| || || |||||||| | || | |||||||| |||||| || | |||||| Sbjct 49010 GAAAGGGACGCCGAGTCCCATGTCGGCAGAGCGCTGGTACATCTGGCAAGACAACTCCCC 48951 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 ||||||||||||||||||||| | |||||||| || ||||||||||| || || || Sbjct 48950 GTCGGCCACGTAAAACTGGCAGAACATGTGGCATGGTGGCAGCGCCATCTCGTTGAGATC 48891 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTC 147218 || |||||||| || |||| ||| | ||| | | | |||||| | | || | Sbjct 48890 AGCTGGGTTCCACGCAGAGAGCACAATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTG 48831 Query 147219 GATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACG 147276 || ||| || | ||||||||||||||||| || | ||||| | | ||| | | | Sbjct 48830 AATCACCTCAGC-GAGCTGGTCCACGCCCTGACCACTGTAGTCCG-CATGCATATTCGTG 48773 Query 147277 TACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTT 147336 ||| |||| || ||||| | |||||||||||||||||| || || |||||||| ||| Sbjct 48772 TACTTGGCACCGAAGTGACGCCACTGGAAGCCGTACACCGGTCCGAGGTCGCC-AACTTC 48714 Query 147337 CTGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | | | | || || | | | ||| ||||| | || || | | ||||||||||| Sbjct 48713 CCGATCCTGCAGTCCTCGACTGTCCAGATACTCGCGCGATCCATTGCCGTCCCAGATGTG 48654 Query 147396 CA-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCT 147454 | | | | || | | | | || | ||| || | |||||||| ||||||| Sbjct 48653 AATGTTCTTCTGCTG-CAACGTGTGAGCGCTTGTGTCTCCGCTAATGAACCACAGCAGCT 48595 Query 147455 CCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCC 147511 |||| || || | ||| || |||| |||||| ||||||| |||| | | |||| Sbjct 48594 CCTCGGCCACACCTCGCCAGAACACCCGCTTGGTCGTCAGCAATGGGAGCACGTTCTCCC 48535 Query 147512 TCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCT 147571 |||| | ||||| ||| | |||||||| |||||||| ||||| ||||| | || || Sbjct 48534 TCAGACTAAACCTCATCTGCGCTCCAAACACTGACAGCGTCCCCGTTCCCGTGCGGT-CT 48476 Query 147572 CCCTGC 147577 ||| || Sbjct 48475 CCCCGC 48470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583448636440800