Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq312 131 2e-25 seq989 116 3e-21 >seq312 Length=34779 Score = 131 bits (144), Expect = 2e-25 Identities = 173/236 (73%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 35503 TTTATTT-CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||| || || ||||| | | || |||| || | ||| |||||| || ||||||| Sbjct 25113 TTTAGTTACCGCCACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGT 25054 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | ||| || || || |||| ||||||||||| || || || |||| |||||||||| Sbjct 25053 AGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGT 24994 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTC 35680 | | || | || |||||||||| || || ||||||| |||| | | || ||| | Sbjct 24993 CAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAC 24935 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||| |||| ||||||||| || ||||||| ||| ||||| || |||||||| Sbjct 24934 GGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24879 Score = 125 bits (138), Expect = 6e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| ||| || || || |||| ||||||||||| || || || Sbjct 24386 CTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 24327 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| || || ||||||| || Sbjct 24326 GATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGT 24268 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| || ||||| |||| ||||||||| || ||||||| ||| |||| Sbjct 24267 TGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 24208 Query 35724 CAAATATCTGCATTCTGTGCG 35744 | || |||||||| || ||| Sbjct 24207 CGAAGATCTGCATCTTGAGCG 24187 Score = 125 bits (138), Expect = 6e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| ||| || || || |||| ||||||||||| || || || Sbjct 24614 CTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 24555 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| || || ||||||| || Sbjct 24554 GATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGT 24496 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| || ||||| |||| ||||||||| || ||||||| ||| |||| Sbjct 24495 TGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 24436 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 24435 CGAAGATCTGCAT 24423 Score = 125 bits (138), Expect = 6e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| ||| || || || |||| ||||||||||| || || || Sbjct 24842 CTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 24783 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| || || ||||||| || Sbjct 24782 GATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGT 24724 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| || ||||| |||| ||||||||| || ||||||| ||| |||| Sbjct 24723 TGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 24664 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 24663 CGAAGATCTGCAT 24651 >seq989 Length=14097 Score = 116 bits (128), Expect = 3e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| || | | || || |||| || |||||||| || || || | Sbjct 1347 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 1288 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | || |||||||||| ||| || ||||| | | ||| Sbjct 1287 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACA-TTG 1229 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | ||||| || ||||| |||| |||||| || || ||||||| || |||||| Sbjct 1228 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 1169 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1168 AAGATCTGCAT 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450763188336760