Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq312 132 5e-26 seq1233 123 3e-23 seq989 113 5e-20 >seq312 Length=34779 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 25096 AGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 25037 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 25036 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 24977 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || || || ||| | | ||| |||| |||||||| || || Sbjct 24976 TTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTG 24917 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | ||| || ||||| || ||||| Sbjct 24916 ATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24879 >seq1233 Length=11135 Score = 123 bits (136), Expect = 3e-23 Identities = 282/421 (67%), Gaps = 5/421 (1%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| ||||||| ||| | ||||| | ||||| | Sbjct 6510 CAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGGGCGACATCCAGGCCGCGCTC 6569 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||| ||| || |||||||| | ||||| | || | Sbjct 6570 GAGACGTACGAGCTCATGAGCCAGAAGTTCTTCACGCACGCGACCCCCACGCTCTTCAAC 6629 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| |||| || || |||| ||||| || |||| |||||| || ||| Sbjct 6630 GCCGGCACGC-CGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTGGCCATGCAGGACGACTC 6688 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 |||||| ||||| ||| ||||||| | ||||| || ||||| | | |||||| Sbjct 6689 CATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGGCGG 6748 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || || | | | | || || | ||||||| | ||| |||| ||| ||||| Sbjct 6749 CATCGGCATCAGCATGCACAACATCCGCGCCACCAACAGCTACATCCGAGGCACGAACGG 6808 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 ||| || | |||||| ||||||||||||| || ||| ||| | || || Sbjct 6809 CTCGTCCAATGGGATCATCCCCATGCTGCGCGTGTTCAACGACACGGCGCGCTACGTGGA 6868 Query 7923 CCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| || |||||||| ||| | |||||||| |||||||||||||||| || Sbjct 6869 CCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGA 6928 Query 7980 C 7980 | Sbjct 6929 C 6929 >seq989 Length=14097 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 1347 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 1288 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| ||||| || || || || ||||| || ||||| || Sbjct 1287 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 1228 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| |||||||| || || ||||| || || || | || || || Sbjct 1227 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 1169 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 1168 AAGATCTGCAT 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505364304560440