Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1233 118 3e-21 >seq1233 Length=11135 Score = 118 bits (130), Expect = 3e-21 Identities = 230/334 (69%), Gaps = 12/334 (4%) Strand=Plus/Plus Query 254755 CACGCATGCGACCCCGACTCTCTTCACGGCCGGTCTGAAGCG-CCAAACCTTGGCCAGCT 254813 |||||| |||||||| || ||||||| ||||| | ||| || | || | | | Sbjct 6602 CACGCACGCGACCCCCACGCTCTTCAACGCCGGCACGCCGCGTCCGCAGCT-GTCGTCGT 6660 Query 254814 GCTACCTACTGACCAT-CAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCGA 254872 ||| ||| ||| |||| ||| || ||| ||| | ||||||| ||| ||||| || Sbjct 6661 GCTTCCTGCTGGCCATGCAG-GACGACTCCATCGAGGGCATCTACGACACGCTCAAGCAG 6719 Query 254873 TGCGCATTCGTGAGTCAATCGAGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGCC 254932 ||||| | | | | | | ||||||| | || ||| ||| |||| | |||||| Sbjct 6720 TGCGCGTGCATCTCCAAGTGGGCCGGCGGCATCGGCATCAGCATGCACAACATCCGCGCC 6779 Query 254933 AGCGGCACACCGATTCGCTCGACGAACGGACGGAGCGGC----GGCATTATACCAATGAT 254988 | | || | | | ||| | ||| |||| || | || || || || ||| | Sbjct 6780 ACCAACA----GCTACATCCGAGGCACGAACGGCTCGTCCAATGGGATCATCCCCATGCT 6835 Query 254989 CCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGC 255048 || ||||||||| || ||| |||||||| || || || |||||||| ||| || | Sbjct 6836 GCGCGTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTC 6895 Query 255049 GTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 |||| ||||||||||||||||||||||||||||| Sbjct 6896 GTTCGCCATCTACCTGGAGCCGTGGCACGCCGAC 6929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588226168054665