Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1009 107 2e-18 seq588 104 3e-17 >seq1009 Length=13826 Score = 107 bits (118), Expect = 2e-18 Identities = 333/505 (66%), Gaps = 18/505 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || ||| |||| |||||||||||||| || | || || | ||||| Sbjct 3342 TACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 3401 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| ||||| ||||| |||| | || | ||| |||| | || || ||||| Sbjct 3402 CAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAGTAC-AGCAGACG 3460 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | ||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 3461 GTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 3520 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| | ||| ||| |||| | | |||||||| || || || |||||| |||| Sbjct 3521 CGGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGCACGATCTCGTG 3580 Query 122610 GA-TAGTTTC---GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 122662 || | | || || || || | || || |||| || | | | || | Sbjct 3581 GACTCGGCTCTCCGGCAGCTTGT---TCACC---AG-CTTGGAGTACATGAGGCATGCGA 3633 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | ||| ||| | ||||| || || || | || || ||||||| || || |||| Sbjct 3634 AATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTGAGCCCAGGCA 3693 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 |||| || |||||||| | ||| | | | ||| || || || ||||||||||| |||| Sbjct 3694 TGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAGAAGATGCCCT 3753 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCAT 122841 |||| | |||||||| | || || || | | |||| ||| || | || |||| Sbjct 3754 CCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGA-CGACACACGCGGGTCGCACCAC 3812 Query 122842 TTCATTGCCCATTTCGCCTTCTTCT 122866 || | |||||| || || ||||||| Sbjct 3813 TTGAGTGCCCAGTTGGCTTTCTTCT 3837 >seq588 Length=22666 Score = 104 bits (114), Expect = 3e-17 Identities = 300/455 (66%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 21873 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 21814 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| ||||| | || | ||| |||| | || || || || Sbjct 21813 CAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTAC-AGCAGGCG 21755 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | ||| |||| ||||| | | |||| | | |||||||||||||| | | Sbjct 21754 GTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAACTCCAC 21695 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| | ||| | |||| | | ||||||| | || || || ||| || |||| Sbjct 21694 CGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCTCGTG 21635 Query 122610 GATAG----TTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | || ||| || || || | || | | | ||| || | | || | Sbjct 21634 CACGCGGCTTTCCGGCAGCTTGTTGATCA-GCTTGGAGTACATGAGG--CAAG-CGAAGT 21579 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| | ||||| || ||| || || ||||| ||||||| ||||| ||||||| Sbjct 21578 CGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATGA 21519 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 | || |||||||| | ||| | |||| |||||| || || ||||||||||| ||||||| Sbjct 21518 GGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCTCCA 21459 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 | ||||| || | || || || | | ||||| Sbjct 21458 CGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAG 21424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627989631391200