Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1233 255 7e-63 seq588 163 4e-35 seq1009 156 5e-33 seq1588 107 2e-18 seq389 86.0 8e-12 >seq1233 Length=11135 Score = 255 bits (282), Expect = 7e-63 Identities = 908/1395 (65%), Gaps = 53/1395 (4%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || || | |||||| ||||| | | |||||||||| |||| ||| || || || || Sbjct 7885 TACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAA 7826 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGTTC 118300 || || |||||||| |||| ||||| ||| || | || | || |||| ||||| Sbjct 7825 GCCGTAGGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTGTT---TAATCACGTTC 7769 Query 118301 --CTTGAGAGCGTCCCAGT--CGTAGTTGAG-CTTTGTC----TCCCCCTGCCACATATC 118351 ||| || || |||||| | || | | | | | |||| |||| || Sbjct 7768 TCCTTCAGCGCAGCCCAGTTCCACAGACCCGACGAAGGCGTGATGCCCC----ACATGTC 7713 Query 118352 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 118411 ||||||| |||||| | | || |||||||||| || ||||| || ||||| || Sbjct 7712 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCC---AAG 7656 Query 118412 CTCC---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCG 118468 |||| || | || || ||| | || |||| || || || || || ||| Sbjct 7655 CTCCTTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTT 7596 Query 118469 AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCA-CAAAATAAATACA 118526 || | | |||| ||| || |||||| ||| || || ||| || | Sbjct 7595 CATGTTGAGCTCACGAGCCTGCTCGCTCTCGAACGCGTAGTT--CATCAGAATGAACGCG 7538 Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || || ||||| || ||||||| || | ||||| || | ||| || ||||| || || Sbjct 7537 TCGGCCAGACCCTGCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCC 7478 Query 118587 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646 | ||||||| || | || ||| || ||| | || || || ||| || |||||| Sbjct 7477 TCCGCCACGGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTT 7418 Query 118647 GTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGG 118705 | || | ||||| | ||| | || || || || || | || |||| || Sbjct 7417 ACCACCTCGTACAGCTTCTGGTAGTTGAACACACCG----TCCTCCTCCACGAACTTGGG 7362 Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765 ||||| | |||||||| || ||||| | |||||| |||||||| || | Sbjct 7361 CAGGGCCACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATGAC 7302 Query 118766 TTCCGTGCACAAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 || ||||||||| ||| |||||||||| ||||| || || ||||| Sbjct 7301 CTCGCAGCACAAGTTG---CTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCG 7245 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 118882 ||| ||| |||||||| |||||| | ||| ||||||||| | |||| | || || Sbjct 7244 GTTGGCCGCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGAT 7185 Query 118883 AGCCTTCCAGACATCGGCAGCTGGCAC-AGTGGCGTTG---GCTCGCCCCTCTTCCTCGT 118938 || ||| || | || | ||| | ||| ||| || || ||||| ||||| Sbjct 7184 GGCGAACCA--CAGCTGCTG--GGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGT 7129 Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 |||| ||||||||| |||||||| || ||| | ||| | || || || || | | Sbjct 7128 ACTTCTCGTAGAGGGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGT 7069 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 |||||||| || ||||| ||| ||| |||| |||||||||||| || |||| Sbjct 7068 TGGGGCAGAACAGGCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGA 7009 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGC 119117 ||||||||| |||| || || || || || || | | || || || || Sbjct 7008 CCCAGAGCGCGTAGAACAGGTCGCGCGCCCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGG 6950 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177 | |||| || || | | || ||||||||||| |||||||| | |||| || ||| Sbjct 6949 AGGTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCC 6890 Query 119178 TTACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 || || | || |||||| || || | ||| ||| |||| || || || ||||| Sbjct 6889 TTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATG 6830 Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 119294 || ||||| |||| ||| ||| || || || || || || |||| | || Sbjct 6829 GGGATGATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATG 6770 Query 119295 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 119354 | ||| ||| || || || || || |||||||| ||||| |||||||| | |||| Sbjct 6769 TTGTGCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGC 6710 Query 119355 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 119414 || ||||||| || ||||| ||||| ||| | || | |||||||| ||||| Sbjct 6709 GTGTCGTAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGC 6650 Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TG 119473 || || | || || || ||||||||||| || || |||||||| |||| | || | || Sbjct 6649 TGCGGACGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGA-ACTTCTG 6591 Query 119474 GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 119533 | ||| ||||| ||||| | |||| | ||||| || ||| || || | || Sbjct 6590 GCTCATGAGCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTTGTGGATGCCCAGCGC 6531 Query 119534 GACCCGCATAAACAT 119548 || ||||| | ||| Sbjct 6530 CACGCGCATGATCAT 6516 >seq588 Length=22666 Score = 163 bits (180), Expect = 4e-35 Identities = 358/528 (68%), Gaps = 14/528 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 21873 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 21814 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| | ||| | || | ||| || | | | || || || Sbjct 21813 CAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAGCAGGCGG 21754 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||| ||||| | |||| | | |||||||||||||| | | Sbjct 21753 TCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAACTCCACC 21694 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| ||| | |||| | | |||||| ||||||| || ||||| || |||| Sbjct 21693 GGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCTCGTGC 21634 Query 129968 ATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAAAC---- 130021 | | | || | ||| | | ||| || |||| |||| | ||||| | Sbjct 21633 ACGCGGCTTTCCGGCAGCT-TGTTGATCAG---CTTG--GAGTACATGAGGCAAGCGAAG 21580 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | |||||||||||| |||||| ||||||||||||| ||||| |||||| Sbjct 21579 TCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATG 21520 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||| | |||||| || | || || ||||| |||||||||||||||||| Sbjct 21519 AGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCTCC 21460 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTT 130200 || || || || | |||||||| | ||||| | || | || ||||| | Sbjct 21459 ACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAG-GACACACGCGGGTCGCACCACCT 21401 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||||| || || || ||| || ||||||| ||||| ||| || Sbjct 21400 GAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGC 21353 >seq1009 Length=13826 Score = 156 bits (172), Expect = 5e-33 Identities = 386/579 (67%), Gaps = 14/579 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||| ||||||||||||| ||||| || | | ||| | ||||| Sbjct 3342 TACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 3401 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || ||||||||||| ||| | || | ||| || | | | || ||||| Sbjct 3402 CAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAGTACAGCAGACGG 3461 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||| ||||||| |||| | |||||||| ||||| || | Sbjct 3462 TCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCACC 3521 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| ||| ||| |||| | | |||||| | |||||| || |||||||| |||| Sbjct 3522 GGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGCACGATCTCGTGG 3581 Query 129968 A-TGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA----AAC 130021 | | | ||| | ||| | || || |||| |||| | |||| || Sbjct 3582 ACTCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCATGCGAAA 3635 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 ||| ||| | |||||||| || ||| | || |||||||||| || || |||||| Sbjct 3636 TCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTGAGCCCAGGCATG 3695 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||| | |||||| | || ||||| ||||| ||||||||||| |||||| Sbjct 3696 AGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAGAAGATGCCCTCC 3755 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTT 130200 || | || ||||| | |||||||| | |||| || || | || ||||||| Sbjct 3756 ACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGA-CGACACACGCGGGTCGCACCACTT 3814 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260 | ||||| | || || |||| || ||||||| || | ||| || | ||| | Sbjct 3815 GAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAGCACACAGGAGGTG 3874 Query 130261 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 ||||| || | || ||||||||| | || ||||| Sbjct 3875 GTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAG 3913 >seq1588 Length=8151 Score = 107 bits (118), Expect = 2e-18 Identities = 306/462 (66%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 14050 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 14109 ||| ||||||| || ||||| ||||| || || |||| ||| | |||||| ||||| Sbjct 2746 CACCGTGATCTGCCGGTCAAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCCGC 2805 Query 14110 GCGGTTCGTCGCCGCGATGACAACGATGCCCGT-CTCGTTATCAAAGCCATCCATCTCAG 14168 ||||||||| | || | || || | |||| |||| | ||| ||||||||||| Sbjct 2806 GCGGTTCGTGCCGGCAAGCACCACCACGCCCTCACTCGAGTTGAAA-CCATCCATCTCGA 2864 Query 14169 TCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC---ATACCACCCGCAC 14225 || || || || | || | ||| || || || || || | | |||| | Sbjct 2865 CCAGCAGCTGGTTCAGCGTGTTTTCACGCTCGTCGTTACCACCCGAGAAGTTACCCTTGC 2924 Query 14226 TGCGTTGCTTAC-CGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCA 14284 | ||| || | | || || || |||||||||||||| || ||||| || |||| || Sbjct 2925 TACGT-GCACGCGCCACAGCATCGATTTCATCGATGAATACAATACACGGAGCATTTGCA 2983 Query 14285 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 14344 ||||| | | || | ||| ||||| | | ||| || || || |||||||| | Sbjct 2984 CGGGCCTCCTTGAACAGATCACGCACACGGGACGGACCCACGCCGACGAACATCTCGATG 3043 Query 14345 AAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCG 14404 |||| | | ||||| || ||| || ||| ||| ||||| || |||| || Sbjct 3044 AAATCTGAGCCGGAAATGCTGAAGAAAGGCACGCTAGCCTCACCAGCCGTGGCCTTCGCC 3103 Query 14405 AGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCA 14464 || || ||||| || || || || || |||| || ||||| |||||| ||||| Sbjct 3104 AGCAGAGTCTTACCAGTACCGGGCGGACCAACGAGCAGAGCACCCTTGGGGATCTTGGCA 3163 Query 14465 CCACTGCCAAAGTAGCG-TTCAGGTTGTTTAAGGAAGTCCAC 14505 ||| | | |||| ||| ||||| |||||||||||| Sbjct 3164 CCAAGCTCTGTGAAGCGCTTCTGGTTG-CGAAGGAAGTCCAC 3204 >seq389 Length=32118 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 179920 AGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 179979 ||||||||||| | || || || ||||| | |||||| || || ||||| |||||| Sbjct 15837 AGTTGCGCCACAGTTGCGTCACGCACATTCAAAAGCTTCCCGCGAAGTGGGAAAACACCG 15896 Query 179980 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 180039 || || ||||| ||||| || | || ||||| || || || | ||| || ||||| || Sbjct 15897 TACTGGTCACGCCCAACAACTGCAAGGCCAGCCACGGCCAGTGCCTTGGCTGAATCTCCT 15956 Query 180040 TCCGTCACGATGAGCGTACACT 180061 || |||| || |||| |||| Sbjct 15957 TCGGTCAAAATAAGCGAGCACT 15978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618393478815320