Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1233 187 3e-42 seq588 131 2e-25 seq1009 127 2e-24 seq389 96.9 4e-15 seq1588 91.5 2e-13 >seq1233 Length=11135 Score = 187 bits (206), Expect = 3e-42 Identities = 433/644 (67%), Gaps = 9/644 (1%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| ||||||||||||| | || || || || ||||| | | | Sbjct 6507 CCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGGGCGACATCCAGGCCGCG 6566 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||||| ||| ||| | || | |||| ||||| || || || ||||| Sbjct 6567 CTCGAGACGTACGAGCTCATGAGCCAGAAGT-TCTTCACGCACGCGACCCCCACGCTCTT 6625 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || || |||| |||||||| | |||| |||| || Sbjct 6626 CAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTGGCCATGCAGGACGA 6685 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||| | || || | | |||| ||| ||||| |||||||| || Sbjct 6686 CTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGG 6745 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 || || || || ||| || | | | |||| || | || || || || || | Sbjct 6746 CGGCATCGGCATCAGCATGCACAACATCCGCGCCACCAACAGCTAC-ATCCGAGGCACGA 6804 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || |||| || || || ||||| ||||| || |||| ||| |||||||| | Sbjct 6805 ACGGCTCGTCCAATGGGATCATCCCCATGCTGCGCGTGTTCAACGACACGGCGCGCTACG 6864 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || | || ||||| || |||| |||| || ||||| ||||||| Sbjct 6865 TGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTGGAGCCGTGGCACG 6924 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | || | | |||||||| || | || ||||| || ||||| | ||| | Sbjct 6925 CCGACGTGTTCGAGTTCCTGGACCTCCGCAAGAACCACGGCAACGAGCTGCACCGGGCGC 6984 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 |||| || |||| ||| |||||| | || ||||||||||||||||| || ||| | || Sbjct 6985 GCGACCTGTTCTACGCGCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGTCCAATG 7044 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAG 104815 |||| ||| || || || || || | || || || || | ||| ||| | ||| || Sbjct 7045 GCAAATGGAGCCTGTTCTGCCCCAACGAAGCTCCCGGACTGTACGAGTGCTG-GGGGGAC 7103 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC 104859 |||||||| ||||| ||| ||||||||| || || ||||| Sbjct 7104 GAGTTTGAGGCCCTCTACGAGAAGTACGAGACGGAGGGCCGGGC 7147 >seq588 Length=22666 Score = 131 bits (144), Expect = 2e-25 Identities = 192/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| |||| |||||| | || || | |||||| | Sbjct 21302 CTCATTGACACGTACATCAAGGACGGTGTCGAGAAGGACCACCTGCTGCGTGCCATCGAG 21361 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || | ||||| | |||||||| | ||||| | | ||||| || | || | Sbjct 21362 ACCATCCCGTGCGTCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCGC-GT-G 21419 Query 94792 CGT--TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 || |||| | ||||| || | || ||||| || ||||| ||||||||||| | Sbjct 21420 TGTCCTCCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGG 21479 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | ||||||||| |||| | |||||||||||||| || |||||||| |||||| |||||| Sbjct 21480 GCTCCTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCT 21539 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGG 94937 | || ||||| ||| ||||||||||| Sbjct 21540 CGAATGAGCTCATCAGCCGTGACGAGGG 21567 >seq1009 Length=13826 Score = 127 bits (140), Expect = 2e-24 Identities = 190/267 (71%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| | |||||||| || ||| | || ||| || Sbjct 3913 CTCATTGACACGTACATCAAGGACACCGTGGAGAAGAACCACCTCCTGTGTGCTATCGAA 3854 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA-GTC 94790 || | ||||| | || |||||||| | ||||| | ||||||| || | || Sbjct 3853 ACGATCCCGTGCGTCCAGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCGCGTGTG 3794 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 ||| ||| | ||||| || | || ||||| | || ||||| ||||||||||| || Sbjct 3793 TCGT-CCTACCCGGAGCGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCTTCTTCTCGGG 3735 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||||| ||| | | | |||||||||||||| || |||||||| || ||| ||||||| Sbjct 3734 CTCCTTTTGCTCGGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGCTCAGCTTCTC 3675 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||| | ||| ||| |||||||| Sbjct 3674 GAACGAGATGATCAGTCGCGACGAGGG 3648 >seq389 Length=32118 Score = 96.9 bits (106), Expect = 4e-15 Identities = 242/360 (67%), Gaps = 12/360 (3%) Strand=Plus/Plus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 |||||||||||||||| || | ||| |||||||| | ||| |||| | |||| |||| Sbjct 14758 AACCCGTACCGATACCTTCAGCACCATTCACGAGCAGCATCGGGATGATAGGCACGTAGT 14817 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATC-TCT- 168393 | | || |||| ||| |||||||| || ||| | | | |||||| ||| Sbjct 14818 AAACGGGTTCAACTGGGAATCCATCGTCGTCGGCGTAGCGCAACAGCGCATCATCGTCTT 14877 Query 168394 CGGATCAAAGATCTTTCGGGCAT-CTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAG 168452 ||| || | | || | | |||||| ||| || ||||| || | | || Sbjct 14878 CGGGG--AATACCAAGCGCGTGTGCTTTTGC-AGCAACGTGAAGATGTAACGAGGGCTAG 14934 Query 168453 ACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 168512 ||||||||||| ||| | || |||||||||||||| |||| | ||||| || Sbjct 14935 CGGCATCCTTACCTCCCTGCAACCGGGTACCAAACTGACCTGACGGATACAGAAGCGGGA 14994 Query 168513 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCG---AGAGAGA 168569 ||||| || |||| | |||| | ||||| |||||||| || || | || || Sbjct 14995 GGTTGTTGGAGCCCACGAAGTCCTGCGCCATATTGACAATAGT---CGAGTGTAGCGATG 15051 Query 168570 CTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCA 168629 |||||||||||||||| || | | ||| | | |||||||||| ||||| |||| Sbjct 15052 CTTCACCGTGGTGGTAGGCTGTGTGCTCACTGCAGTAGCCCGCCAACTGTGCCACCTTCA 15111 >seq1588 Length=8151 Score = 91.5 bits (100), Expect = 2e-13 Identities = 278/427 (65%), Gaps = 27/427 (6%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||||| || ||||| ||||| ||||| |||| || | ||||| ||||| |||| || Sbjct 2752 GATCTGCCGGTCAAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCCGCGCGGTT 2811 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9633 ||| |||| | || || | || ||| | | |||||||||||||| || Sbjct 2812 CGTGCCGGCAAGCACCACCACGCCC---TCACTCGAGTTGAAACCATCCATCTCGACCAG 2868 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC--AGCACTG--C 9689 || ||||| | || | ||| || || || || |||||| || | | | Sbjct 2869 CAGCTGGTTCAGCGTGTTTTCACGCTCGTCGTT---------ACCACCCGAGAAGTTACC 2919 Query 9690 GTTGCT---TTC-----CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT 9741 ||||| | | |||| ||||| || ||||| ||||| || || || || ||| Sbjct 2920 CTTGCTACGTGCACGCGCCACAGCATCGATTTCATCGATGAATACAATACACGGAGCATT 2979 Query 9742 TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTC 9801 | | || || | | || ||||| || ||||| | ||||| || || |||||||| Sbjct 2980 TGCACGGGCCTCCTTGAACAGATCACGCACACGGGACGGACCCACGCCGACGAACATCTC 3039 Query 9802 CACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9861 | || | || | ||||| || ||| || || ||| ||||| || |||| Sbjct 3040 GATGAAATCTGAGCCGGAAATGCTGAAGAAAGGCACGCTAGCCTCACCAGCCGTGGCCTT 3099 Query 9862 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 9921 || || ||||||||||| ||||| ||| ||| |||| || ||||| || ||||| Sbjct 3100 CGCCAGCAGAGTCTTACCAGTACCGGGCGGACCAACGAGCAGAGCACCCTTGGGGATCTT 3159 Query 9922 GGCGCCA 9928 ||| ||| Sbjct 3160 GGCACCA 3166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583221451768280