Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq586 154 7e-33 >seq586 Length=22678 Score = 154 bits (170), Expect = 7e-33 Identities = 333/495 (67%), Gaps = 15/495 (3%) Strand=Plus/Minus Query 66242 TGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66301 ||||| |||||| || |||||| || | ||| | | ||||||||||| || ||||| || Sbjct 14459 TGCCTTCATCGATGCAGAGCACGCCATTGACGCCCACTACGCCAAGGCCCTGGGTGTCGA 14400 Query 66302 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66361 | |||| ||| || ||||||||| | || || | || |||||||||| ||| Sbjct 14399 CATCGATGCCCTGTACGTCTCGCAGCCGGACTCCGGAGAAGAAGCTCTGGAGATCGCTGA 14340 Query 66362 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66421 | ||| || || || | | || |||| || | ||| |||||||| || || Sbjct 14339 CACGCTCATCCGATCGGGAGCGGTGGATCTCGTGGTGCTGGACAGCGTGGCGGCTCTTGT 14280 Query 66422 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66481 |||||| || |||||||| || || || || ||| || | | ||||| ||||| || Sbjct 14279 GCCGCGTGCAGAGCTCGAGGGTGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGTCT 14220 Query 66482 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 66538 |||| || || |||||||| | || || | | |||| |||| ||| | | Sbjct 14219 CATGAGCCAAGCGCTGCGCAAGTTGACTGGATCGCTGTCCAAGTCCAACTGCACCATTA- 14161 Query 66539 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAACGA 66595 ||| | |||||| | ||| ||||| | || ||| || ||| |||| || Sbjct 14160 --TCTTCCTGAACCAGATCCGCCAGAAGGTGGG---CGTCATCTTCGGGTCCCCG---GA 14109 Query 66596 GACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCG 66655 | || ||||||| | ||| ||| | | |||||| || || ||| ||||| |||| || Sbjct 14108 GGTGACATCGGGCGGTACGGCGTTGCGCTACTACGCGTCGGTGCGCCTGGATATCCGCCG 14049 Query 66656 CATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGT 66715 || | || ||||| || || || |||||||||| || ||| ||||| | Sbjct 14048 CAAGACAGCCATCAAGGAGGGTGACCAGATTGTCGGCAACGAAACGGTGGTCAAGGTGGC 13989 Query 66716 CAAGAACAAGCTGGC 66730 ||||||||||||||| Sbjct 13988 CAAGAACAAGCTGGC 13974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240944150630100