Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq41 170 2e-37 >seq41 Length=78637 Score = 170 bits (188), Expect = 2e-37 Identities = 334/492 (68%), Gaps = 14/492 (3%) Strand=Plus/Plus Query 34227 TGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGA 34286 |||||||||| || || |||| |||| || |||| ||||||||||||||||||| | | Sbjct 48553 TGCTGACGACCAAGCGGGTGTTCTGGCGAGGTGTGGCCGAGGAGCTGCTGTGGTTCATTA 48612 Query 34287 GGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGAT------CTGGGACG 34340 | || | ||| | | | | | ||| | | | ||| || |||||||| Sbjct 48613 GCGGAGACACAAGCGCTCA------CACGTTGCAGCAGAAGAACATTCACATCTGGGACG 48666 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACT 34400 | || || || || | |||||||| || || | | |||||| | |||||| Sbjct 48667 GCAATGGATCGCGCGAGTATCTGGACAGTCGAGGACTGCAGGATCGGGAAGTTGGCGACC 48726 Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 | || ||||| ||||| ||||||||| | ||||| || || |||| | | | | Sbjct 48727 TCGGACCGGTGTACGGCTTCCAGTGGCGTCACTTCGGTGCCAAGTACACGAATATGCATG 48786 Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGG 34519 ||||||| || ||||| | ||||||||| || | | ||||| ||| || | Sbjct 48787 CGGACTACAGTGGTCAGGGCGTGGACCAGCTCGCTG-AGGTGATTCACAAGCTGCGTACG 48845 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 ||||| ||| | |||| ||| | | ||||||||||| |||||| |||| Sbjct 48846 AACCCGACGGACCGCCGGATTGTGCTCTCTGCGTGGAACCCAGCTGATCTCAACGAGATG 48905 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 ||||| || || ||||||| ||||||| || ||||| || | |||||| |||| ||| Sbjct 48906 GCGCTGCCACCATGCCACATGTTCTGCCAGTTTTACGTGGCCGACGGGGAGTTGTCTTGC 48965 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 ||| | || || || || | |||||||| | || || || ||||||||||| || ||| Sbjct 48966 CAGATGTACCAGCGCTCTGCCGACATGGGACTCGGCGTCCCTTTCAACATTGCCAGCTAC 49025 Query 34700 GCTCTGCTCACG 34711 || || || ||| Sbjct 49026 GCGCTTCTAACG 49037 Score = 170 bits (188), Expect = 2e-37 Identities = 334/492 (68%), Gaps = 14/492 (3%) Strand=Plus/Minus Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCG 6693 ||| || || ||||| || ||||||||||| || || || | |||||||| | || || Sbjct 49037 CGTTAGAAGCGCGTAGCTGGCAATGTTGAAAGGGACGCCGAGTCCCATGTCGGCAGAGCG 48978 Query 6694 TTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCA 6753 || || | |||||| |||| |||||| | || ||||| || ||||||| ||||||| Sbjct 48977 CTGGTACATCTGGCAAGACAACTCCCCGTCGGCCACGTAAAACTGGCAGAACATGTGGCA 48918 Query 6754 CGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCT 6813 || || ||||||||| |||||| ||||||||||| | | ||| |||| | Sbjct 48917 TGGTGGCAGCGCCATCTCGTTGAGATCAGCTGGGTTCCACGCAGAGAGCACAATCCGGCG 48858 Query 6814 GTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTC 6872 ||| |||||| || ||| ||||| | | || ||||||||| | ||||| | Sbjct 48857 GTCCGTCGGGTTCGTACGCAGCTTGTGAATCACCT-CAGCGAGCTGGTCCACGCCCTGAC 48799 Query 6873 CCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGT 6932 | |||||||| | | | |||| || || ||||| | ||||||||| |||| Sbjct 48798 CACTGTAGTCCGCATGCATATTCGTGTACTTGGCACCGAAGTGACGCCACTGGAAGCCGT 48739 Query 6933 AGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTC 6992 | ||||| || | |||||| | |||||| | | || || |||||||| | || | Sbjct 48738 ACACCGGTCCGAGGTCGCCAACTTCCCGATCCTGCAGTCCTCGACTGTCCAGATACTCGC 48679 Query 6993 GAGACCCGTGAGCGTCCCAG------ATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGT 7046 | || || | |||||||| || ||| | | | ||| | | | | Sbjct 48678 GCGATCCATTGCCGTCCCAGATGTGAATGTTCTTCTGCTGCAACGTG------TGAGCGC 48625 Query 7047 TCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTT 7106 | ||| | || || | ||||||||||||||||||| |||| || |||| |||| || | Sbjct 48624 TTGTGTCTCCGCTAATGAACCACAGCAGCTCCTCGGCCACACCTCGCCAGAACACCCGCT 48565 Query 7107 TCGTCGTCAGCA 7118 | |||||||||| Sbjct 48564 TGGTCGTCAGCA 48553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448232159097840