Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq312 158 3e-33 seq989 136 9e-27 seq1785 91.5 3e-13 >seq312 Length=34779 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 25090 AGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 25031 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || |||||||| || | || ||||||||| Sbjct 25030 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 24971 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || |||||||| ||||| | ||| || || || || || ||||||||| Sbjct 24970 TGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 24911 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||| || || | |||||| Sbjct 24910 TTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24879 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || ||||| || || || || || | || || Sbjct 24406 AGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCC 24347 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || |||||||| || | || ||||||||| Sbjct 24346 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 24287 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || |||||||| ||||| | ||| || || || || || ||||||||| Sbjct 24286 TGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 24227 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| |||||||| || || | |||||| || Sbjct 24226 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTT 24192 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || ||||| || || || || || | || || Sbjct 24634 AGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCC 24575 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || |||||||| || | || ||||||||| Sbjct 24574 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 24515 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || |||||||| ||||| | ||| || || || || || ||||||||| Sbjct 24514 TGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 24455 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||| || || | |||||| Sbjct 24454 TTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24423 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || ||||| || || || || || | || || Sbjct 24862 AGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCC 24803 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || |||||||| || | || ||||||||| Sbjct 24802 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 24743 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || |||||||| ||||| | ||| || || || || || ||||||||| Sbjct 24742 TGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 24683 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||| || || | |||||| Sbjct 24682 TTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24651 >seq989 Length=14097 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| || || | || || || ||||||||||| |||||||| Sbjct 1345 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 1286 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| || | || |||||||||||||| || || || || || || Sbjct 1285 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 1226 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 1225 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 1166 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 1165 ATCTGCAT 1158 >seq1785 Length=6806 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || || ||||| || |||||||| || |||| || || Sbjct 1899 CGAAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTG 1840 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| |||||||| || || || |||||||| || | |||| Sbjct 1839 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCT 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159071845725905