Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq256 194 4e-44 seq312 152 1e-31 seq989 114 3e-20 seq1233 96.9 8e-15 seq1970 87.8 4e-12 >seq256 Length=39382 Score = 194 bits (214), Expect = 4e-44 Identities = 215/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||||| ||| ||| ||| | ||| || | ||||| | | | ||| | | Sbjct 23557 ACTTTATATTTAATTTTTAGTGCTTTTGCGGGTGTTGTGGGTACAACACTATCTCTTTTA 23498 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || | | |||||||| || ||| |||||| || | |||||| ||| | || Sbjct 23497 ATCCGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGTAATCATCAATTATAT 23438 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || ||| || |||| || ||||| ||| ||||| |||| ||||| |||||||| | | Sbjct 23437 AATGTTGTTGTTACTGCTCATGCTTTTATTATGGTTTTTTTTTTAGTTATGCCTGCCTTA 23378 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || ||||| || ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 23377 ATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 23318 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 23317 CCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCTTTATT 23271 Score = 132 bits (146), Expect = 1e-25 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| Sbjct 18631 AAAATTTGTCCATCAGTAATAGAAATAACATTAGTTGGGATATAAGCAGAAACATCACCA 18572 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || |||||| || |||| ||| || ||||||| |||||||| Sbjct 18571 GCTTGCGTTTCAATAATAGGTAATGCAGTTAATGAACCTCCACCAATTTTTTTATT 18516 Score = 113 bits (124), Expect = 1e-19 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||| ||||||| | || || | |||||| Sbjct 23052 AAAGGTAATCTATGAAAACTTAAACCAGGAGCTCGCATATTATAAATAGTTGAAATAAAA 23111 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | ||||| ||||||| | |||||||||||| || || ||||| Sbjct 23112 TTAATAGCACCTAATAATGAAGAAATACCTGTTAAATGTAAACTAAAAATAGCCAAATCT 23171 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 |||||| || ||||| || |||| |||| ||| || || ||||| || || || Sbjct 23172 ACGGAAGGTCCTGAGTGTGCTTGTACACTAGA---TAATGGTGGATAAACCGTCCAACCA 23228 Query 371542 GTTC 371545 |||| Sbjct 23229 GTTC 23232 Score = 109 bits (120), Expect = 1e-18 Identities = 101/125 (81%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 3271 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 3330 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| ||| |||||||||| | Sbjct 3331 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCA 3389 Query 6865 GTAAT 6869 | ||| Sbjct 3390 GCAAT 3394 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 38370 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 38429 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 38430 GTAACATGATGTATAGGGTCTGACAC 38455 Score = 100 bits (110), Expect = 7e-16 Identities = 113/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 3958 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 3899 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || ||||| | || | ||||| ||| | || Sbjct 3898 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCAATTATACTTTTCAGGCGGAGTGCTT 3839 Query 7850 TACGCGTTAGCTTAATTA-ATATAAAAA 7876 ||||||||||| |||| || |||||| Sbjct 3838 AACGCGTTAGCT--ATTATATCTAAAAA 3813 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||| ||||| ||||||||||||||||| | | ||||| || || || || Sbjct 22874 TTCAGGATGACCGAAAAACCAGAATAAATGTTGATATAATACTGGATCTCCCCCCCCAGA 22933 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| ||||| ||||||||||||||||| |||| Sbjct 22934 AGGATCATAAAATGATGTATTTAAATTTCTATCAGTTAATAACA 22977 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 ||||| | || || || |||||||||| | |||| ||||||||||| |||||||||||| Sbjct 18306 CAATATTTAGCACCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGGGATAATGGTAAA 18365 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||| | || | || ||||||||| |||||| Sbjct 18366 CATGCTGTTATTTTTTATGATGATTTATCAAAACAA 18401 >seq312 Length=34779 Score = 152 bits (168), Expect = 1e-31 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| |||||| ||| || || Sbjct 24415 CGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTG 24356 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 24355 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCC 24296 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || || || |||||||| ||||| | ||| || | |||||||| | | Sbjct 24295 TCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 24236 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||||||||||| ||| || | ||| | ||||| || Sbjct 24235 GTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTT 24192 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| |||||| ||| || || Sbjct 24643 CGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTG 24584 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 24583 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCC 24524 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || || || |||||||| ||||| | ||| || | |||||||| | | Sbjct 24523 TCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 24464 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||| ||| || | ||| | ||||| Sbjct 24463 GTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24423 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| |||||| ||| || || Sbjct 24871 CGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTG 24812 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 24811 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCC 24752 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || || || |||||||| ||||| | ||| || | |||||||| | | Sbjct 24751 TCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 24692 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||| ||| || | ||| | ||||| Sbjct 24691 GTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24651 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 25100 ACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 25041 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 25040 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCC 24981 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || || || |||||||| ||||| | ||| || | |||||||| | Sbjct 24980 CTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 24921 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||| ||| || | ||| | ||||| Sbjct 24920 CGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24879 >seq989 Length=14097 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || || ||| Sbjct 1315 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 1256 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 1255 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTG 1196 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 1195 ATGGTCTTGCCCGTCA 1180 >seq1233 Length=11135 Score = 96.9 bits (106), Expect = 8e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 193524 GCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAATGTGATGC 193583 ||||| ||||| | |||||||||| ||| ||| || ||| | || ||| | Sbjct 7237 GCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGAAC 7178 Query 193584 CAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTAC 193643 || || | || || || | ||| | | |||| || ||| |||||||||| ||||| Sbjct 7177 CACAGCTGCTGGGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGTACTTCTCGTAG 7118 Query 193644 AGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAAG 193703 || ||||||| || | || || |||| || ||||||||||| || ||||| || Sbjct 7117 AGGGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGTTGGGGCAGAAC 7058 Query 193704 AGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAGATGTCCAAATGGCG 193763 || ||||| | |||| || ||||||||||||||||| || | ||| | ||| Sbjct 7057 AGGCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGCG 6998 Query 193764 TAGAAAAG 193771 ||||| || Sbjct 6997 TAGAACAG 6990 >seq1970 Length=6445 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| ||| || ||||||||| | |||||||| || || |||||||||||||||||||| Sbjct 5121 AATAATTGTCCGTCAGTAATATAAATAACATTAGTTGGAATATAAGCAGAAACATCACCA 5062 Query 4531 GCTTGTGTTTCGACAACA 4548 ||||| ||||| | |||| Sbjct 5061 GCTTGAGTTTCAAAAACA 5044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192448737585518