Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq41 134 1e-26 seq844 82.4 6e-11 >seq41 Length=78637 Score = 134 bits (148), Expect = 1e-26 Identities = 434/673 (64%), Gaps = 33/673 (5%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 |||||||||||||||| || || ||||| ||||| || | | ||||| |||||| || Sbjct 49129 AGCGGTTCCACGTGGTTCAGATACACGTGTGCATCGCCTATGACGTGGATAAACTCGCCA 49070 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || || || || || || | | ||| || || | ||||||||| ||||| Sbjct 49069 GGCTTCAGTCCAGTCACCTGCGCTACTAGTCGCGTTAGAAGCGCGTAGCTGGCAATGTTG 49010 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || || || ||||| |||||||| | || | |||||| | |||||| || | ||| ||| Sbjct 49009 AAAGGGACGCCGAGTCCCATGTCGGCAGAGCGCTGGTACATCTGGCAAGACAACTCCCCG 48950 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCA------TGAGA 29878 ||| |||||||||||| | ||||| ||||| || || || |||| ||||| Sbjct 48949 TCGGCCACGTAAAACTGGCAGAACATG---TGGCATGGTGGCAGCGCCATCTCGTTGAGA 48893 Query 29879 CCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGT-CTTCTGGGTTGTTC-- 29935 | || || |||||||| ||| | | | || || | || | || || | || | Sbjct 48892 TC--AG-CT---GGGTTCCACGCAGAGAGCACAATCCGGCGGTCCGTCGGGTTCGTACGC 48839 Query 29936 --CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNN 29992 || || | || | ||| ||||| ||||| ||| || |||||| | Sbjct 48838 AGCTTGTGAATCACCTCAGCG------AGCTGGTCCACGCCCTGACCACTGTAGTCCGCA 48785 Query 29993 NNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGG 30052 |||| || | ||||||||| |||||||||||||| ||| Sbjct 48784 TGCATATTCGTGTACTTGGCACCGAAGTGACGCCACTGGAAGCCGTACACCGGTCCGAGG 48725 Query 30053 TCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 30112 || || |||||| | || | || | |||||| | | || | || || ||| || Sbjct 48724 TCGCCAACTTCCCGATCCTGCAGTCCTCGACTGTCCAGATACTCGCGCGATCCATTGCCG 48665 Query 30113 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAAC 30172 |||||||| | | ||||| | | | | | ||||| || || | |||| Sbjct 48664 TCCCAGATGTGAATGTTCTTCTGCTGCAACGTGTGAGCGCTTGTGTCTCCGCTAATGAAC 48605 Query 30173 CACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA--GGGGAA 30230 |||||||||||||| | || | ||| || |||| ||||||||| || | ||| Sbjct 48604 CACAGCAGCTCCTCGGCCACACCTCGCCAGAACACCCGCTTGGTCGTCAGCAATGGGAGC 48545 Query 30231 ACTGTC-CCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCT 30289 || || || | || | ||||| ||| | ||||||| |||| ||||| || Sbjct 48544 ACGTTCTCCCTCAGACTAAACCTCATCTGCGCTCCAAACACTGACAGCGTCCCCGTTCCC 48485 Query 30290 GTCCTGTCTCCCC 30302 || | |||||||| Sbjct 48484 GTGCGGTCTCCCC 48472 >seq844 Length=16701 Score = 82.4 bits (90), Expect = 6e-11 Identities = 183/272 (67%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| |||||| | |||||| |||| | |||||| | || || | ||| | Sbjct 10423 ACTCG-ATCTTCTCGAGGATGAGCTGCGCTACGCGGTCGCCGCGCTTCACGGGGAAGTCC 10481 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 || | | ||| ||||| || ||||| | |||||| | |||||| | ||| | || Sbjct 10482 TCGCTCGAGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCTGCGTCGATGACG 10541 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 || || || ||| || ||||| ||| || ||||| || | || ||||| | || Sbjct 10542 CCTGCGCCCGTGTCGATGAACTTCTTCCACGCGAGGCCCGAGCGAGGCGCCACGCGCGCG 10601 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| ||| ||||| | | ||||||||||| || ||| || ||||| | Sbjct 10602 TAGCAGCCGTCGGGCACAGCGATGATGAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCC 10661 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTC 50132 ||||| ||| || || ||||||| ||||| Sbjct 10662 GGGACGACGGCGTCGTAGGCGGCCGAGAGGTC 10693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406136484234742