Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2561 129 6e-25 seq1300 129 6e-25 seq1932 125 7e-24 >seq2561 Length=604796 Score = 129 bits (142), Expect = 6e-25 Identities = 306/459 (67%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 371298 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGA 371239 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || ||||| | ||| || || | | ||| || || | Sbjct 371238 AGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCG 371179 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| |||| || ||||| | | || || | ||| | || | Sbjct 371178 AGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACAC 371119 Query 17136 T---GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 || || ||| || || |||| ||| || | || | ||| ||||| | Sbjct 371118 GAGGGTCACA---CCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCT 371062 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | ||||| | || | || || ||| ||| | || ||||| ||||| || | Sbjct 371061 CGATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCA 371002 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| || | Sbjct 371001 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAG 370942 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGCC 17370 | |||| | ||| || || | ||| |||| ||| || || |||||||||||||| Sbjct 370941 CCTCCGGCACTTGCACCTCATTGCTGAA--GTTCATCGCCAGGTTCTCGTTCACGATGCC 370884 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||||| || ||||| || |||| | ||||| ||||| Sbjct 370883 GTCGCTGGCAGCGAAGAATGCCAGCACGTGCTTGATGAA 370845 >seq1300 Length=5041 Score = 129 bits (142), Expect = 6e-25 Identities = 306/459 (67%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 1980 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGA 2039 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || ||||| | ||| || || | | ||| || || | Sbjct 2040 AGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCG 2099 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| |||| || ||||| | | || || | ||| | || | Sbjct 2100 AGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACAC 2159 Query 17136 T---GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 || || ||| || || |||| ||| || | || | ||| ||||| | Sbjct 2160 GAGGGTCACA---CCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCT 2216 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | ||||| | || | || || ||| ||| | || ||||| ||||| || | Sbjct 2217 CGATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCA 2276 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| || | Sbjct 2277 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAG 2336 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGCC 17370 | |||| | ||| || || | ||| |||| ||| || || |||||||||||||| Sbjct 2337 CCTCCGGCACTTGCACCTCATTGCTGAA--GTTCATCGCCAGGTTCTCGTTCACGATGCC 2394 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||||| || ||||| || |||| | ||||| ||||| Sbjct 2395 GTCGCTGGCAGCGAAGAATGCCAGCACGTGCTTGATGAA 2433 >seq1932 Length=9237 Score = 125 bits (138), Expect = 7e-24 Identities = 305/459 (66%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 262 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGA 321 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || ||||| | ||| || || | | ||| || || | Sbjct 322 AGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCG 381 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| |||| || ||||| | | || || | ||| | || | Sbjct 382 AGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACAC 441 Query 17136 T---GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 || || ||| || || |||| ||| || | || | ||| ||||| | Sbjct 442 GAGGGTCACA---CCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCT 498 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | ||||| | || | || || ||| ||| | || ||||| ||||| || | Sbjct 499 CGATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCA 558 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| || | Sbjct 559 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAG 618 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGCC 17370 | |||| | ||| || || | ||| |||| ||| || || |||||||||||||| Sbjct 619 CCTCCGGCACTTGCACCTCATTGCTGAA--GTTCATCGCCAGGTTCTCGTTCACGATGCC 676 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||||| || ||||| || || | | ||||| ||||| Sbjct 677 GTCGCTGGCAGCGAAGAATGCTAGCACGTGCTTGATGAA 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517528935031680