Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2561 127 2e-24 seq1300 127 2e-24 seq1932 122 9e-23 >seq2561 Length=604796 Score = 127 bits (140), Expect = 2e-24 Identities = 305/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 371298 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGA 371239 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 371238 AGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAACCC 371180 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 || ||||| || ||||| || | || || || | | || |||| ||| | | | | Sbjct 371179 GAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACA 371120 Query 16373 TTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT 16432 | | ||| || | |||| ||| || | | | || ||||| || Sbjct 371119 CGAGGGTCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCG 371060 Query 16433 ATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 ||||| | ||| | || || ||| || | || ||||| || ||||| | Sbjct 371059 ATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGC 371000 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 ||||| || ||||| |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 370999 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCC 370940 Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCAGGTTCTCATTCACGATACCGT 16610 |||| | ||| || || | || |||| |||||||||||| |||||||| |||| Sbjct 370939 TCCGGCACTTGCACCTCATTGCTGAA--GTTCATCGCCAGGTTCTCGTTCACGATGCCGT 370882 Query 16611 CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 | || ||||| || || |||| | |||||| ||||| Sbjct 370881 CGCTGGCAGCGAAGAATGCCAGCACGTGCTTGATGAA 370845 >seq1300 Length=5041 Score = 127 bits (140), Expect = 2e-24 Identities = 305/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 1980 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGA 2039 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 2040 AGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAACCC 2098 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 || ||||| || ||||| || | || || || | | || |||| ||| | | | | Sbjct 2099 GAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACA 2158 Query 16373 TTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT 16432 | | ||| || | |||| ||| || | | | || ||||| || Sbjct 2159 CGAGGGTCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCG 2218 Query 16433 ATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 ||||| | ||| | || || ||| || | || ||||| || ||||| | Sbjct 2219 ATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGC 2278 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 ||||| || ||||| |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 2279 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCC 2338 Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCAGGTTCTCATTCACGATACCGT 16610 |||| | ||| || || | || |||| |||||||||||| |||||||| |||| Sbjct 2339 TCCGGCACTTGCACCTCATTGCTGAA--GTTCATCGCCAGGTTCTCGTTCACGATGCCGT 2396 Query 16611 CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 | || ||||| || || |||| | |||||| ||||| Sbjct 2397 CGCTGGCAGCGAAGAATGCCAGCACGTGCTTGATGAA 2433 >seq1932 Length=9237 Score = 122 bits (134), Expect = 9e-23 Identities = 304/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 262 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGA 321 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 322 AGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAACCC 380 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 || ||||| || ||||| || | || || || | | || |||| ||| | | | | Sbjct 381 GAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACA 440 Query 16373 TTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT 16432 | | ||| || | |||| ||| || | | | || ||||| || Sbjct 441 CGAGGGTCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCG 500 Query 16433 ATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 ||||| | ||| | || || ||| || | || ||||| || ||||| | Sbjct 501 ATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGC 560 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 ||||| || ||||| |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 561 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCC 620 Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCAGGTTCTCATTCACGATACCGT 16610 |||| | ||| || || | || |||| |||||||||||| |||||||| |||| Sbjct 621 TCCGGCACTTGCACCTCATTGCTGAA--GTTCATCGCCAGGTTCTCGTTCACGATGCCGT 678 Query 16611 CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 | || ||||| || || || | | |||||| ||||| Sbjct 679 CGCTGGCAGCGAAGAATGCTAGCACGTGCTTGATGAA 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511397932456320