Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq2512 93.3 3e-14 >seq2512 Length=294636 Score = 93.3 bits (102), Expect = 3e-14 Identities = 182/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 97003 AGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTC 97062 || |||||||| |||| || | ||||||||||||| | |||| |||| ||| ||| Sbjct 174026 AGCGTTGGGAATGGCCGCGGTGAACGCGTAAGCTGCTTTTGAAGAGGCTCAACGTGGTTC 174085 Query 97063 ACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACA 97122 | ||| | || || || || | | |||||||||||| ||||| || | | || Sbjct 174086 AGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCAGGTTTCAACCCTGCCACT 174145 Query 97123 TGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCC 97182 || || | | || || | || | ||||| ||||||||||| ||||| || || ||| Sbjct 174146 TGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTAAACGGCACACCAAGACCC 174205 Query 97183 ATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGA 97242 || || || || | || || | |||||| || | || || || ||| || || || Sbjct 174206 ATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCGTCCGCCACGTAGAATTGG 174265 Query 97243 CTCAATACATGACAGGGGGGCAACGCCAT 97271 | || | || || || |||| ||||| Sbjct 174266 CAGAACATGTGGCACGGTGGCAGTGCCAT 174294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346773112716320