Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2516 154 3e-32 seq2561 141 2e-28 seq1300 96.9 7e-15 seq2573 95.1 3e-14 >seq2516 Length=319815 Score = 154 bits (170), Expect = 3e-32 Identities = 858/1358 (63%), Gaps = 69/1358 (5%) Strand=Plus/Minus Query 248419 ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCG 248478 |||||| | |||||| || |||||| || | || |||||||| ||| ||||| Sbjct 122382 ATGTACGTGGTCAAGCGCGATGGGCGCTCCGAGGAAGTCAAGTTCGACAAGATCACGGCG 122323 Query 248479 CGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCC 248538 ||||||| |||||||| || || ||| | || ||| || || || ||| | Sbjct 122322 CGCATCACCAAGCTCTGCTACGGACTGAACCCGGACTATGTGGACGCCGTCAAGATCTCG 122263 Query 248539 CAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCT 248598 ||||| || | ||||||| ||| |||| ||||| ||| | || |||||| | || Sbjct 122262 CAGAAGGTCGTGGCGGGCGTGTACCCCGGCGTAACCACGTCCGAGCTGGACGAGCTGGCC 122203 Query 248599 GCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGGAG 248657 || |||||||| |||||| | | ||| ||||| |||| ||| |||||| | | | Sbjct 122202 GCCGAGACGGCCGCGTACCAGAGCAC-GCAGCACCCAGACTTCTCCAAGCTGGCGGCGCG 122144 Query 248658 GATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGA 248717 |||||||| || | || ||||| | ||||| || ||| || | ||| | | Sbjct 122143 CATCGCCGTGTCCAACCTGCACAAGAACACGAACAAGGTCTTCAGTGACAACATCGAGGT 122084 Query 248718 CCT--------ACATGC-CTATGGGATGG------------------TCGCCGATGACGT 248750 | | ||| || | | || || ||||||| ||||| Sbjct 122083 CTTCCACAAGAACACGCACGAGAAGACGGGCGCCGCGGCGCCGCTCATCGCCGACGACGT 122024 Query 248751 CCACAC---CGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAA 248807 | | ||| || || |||| | || || || || || | ||| | Sbjct 122023 GTATGCGCTCGTGATGGAGCACAAGG---ACGAGCTTAACTCGGCCATCATCCACGACCG 121967 Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 || || |||||||| | ||| | ||||| ||||| ||| || ||| || | Sbjct 121966 GGACTTTGAGTACGACTACTTCGGCTTCAAGACGCTCGAGCGGGGCTACCTCTTCCGCGT 121907 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | || ||| ||||||| || ||||| ||| | ||||| ||||| | || ||||| Sbjct 121906 GAACGGAAAGGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATTCA 121847 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA--TG 248985 |||| | ||||| || | || | ||||| ||| | | | || | Sbjct 121846 CAAGCAAGACATCCAGGCGGCACTGCACACGTATGAGCTCATG--TCACAGATGTTCTTT 121789 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTC 249041 || || || || || |||||||| |||||||| || |||| || |||| || Sbjct 121788 ACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCA----GCTGTCGTC 121733 Query 249042 GTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACA 249101 ||| || || || |||||||| |||||||| | || |||||||| |||||||| || || Sbjct 121732 GTGTTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCA 121673 Query 249102 GACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGC 249161 | ||| || || || | || || || || || | | ||||||||| || Sbjct 121672 GTGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGC 121613 Query 249162 GAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGAT-GGTATCGTACCCCTCCTTC 249220 | | |||||| || || || || ||| | || ||| | ||| | || Sbjct 121612 CACGAACAGCTACATCCGCGGCACGAACGGA-TCATCCAACGGGATCATCCCCATGCTGA 121554 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | ||| | ||| ||| | | | |||||| || || || || || |||| Sbjct 121553 GGGTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGT 121494 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| || |||| |||||||||||| | || ||||||||||| || |||| Sbjct 121493 TCGCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGA 121434 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || ||||||||||||| | ||||| ||||||||||||| ||||||||| |||| Sbjct 121433 ACCACGGCAACGAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATC 121374 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCC 249457 |||||||| || || | || ||||| | |||| ||| | | || || |||| Sbjct 121373 TGTTCATGAAGCGTGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCC 121314 Query 249458 CGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATC 249515 | | ||| ||| |||| ||| ||||| | || || |||| ||||| Sbjct 121313 CCGGACTCTACGAGTGCTGGGGCGACGAGTTCGA--GACTCTGTACGAGAAGTACGAGAA 121256 Query 249516 CAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGA 249569 | || || ||||||| ||||| || | | || || || | | |||| Sbjct 121255 GGAGGGGCGCGCGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCA---TCCTGGA 121199 Query 249570 GTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGA 249628 | ||||| ||||| || | ||||| | || ||| ||| |||||| |||| |||| Sbjct 121198 CGCGCAGATTGAGACGGGCGTGCCGT-TCATGCTGTACAAGGACGCGGCCAACCGCAAGT 121140 Query 249629 GTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAA 249687 ||||| | | | || || || ||||||||| || | || ||| ||| | || | Sbjct 121139 CGAACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACTTGTGCTGC-GAGATTATGGAG 121081 Query 249688 TACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||| |||| || ||| | || || ||||||||||| Sbjct 121080 TACACGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGC 121043 >seq2561 Length=604796 Score = 141 bits (156), Expect = 2e-28 Identities = 261/380 (69%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||||||||| ||| |||| ||||| || || ||||||||||| ||||| | || Sbjct 285395 CTGCCTCATTTGCTGTTCTACGGACCTCCAGGTACGGGCAAGACGTCTACCATTGTCGCC 285336 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 ||| || || || ||| || | | || | ||| | || ||||||||| Sbjct 285335 GTGGGGCGTCAGCTCTTCGGCCCGGATTTCCGCAAGAACGGCCGCTTCCTGGAGCTGAAC 285276 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 || || || || || || | | || || || || ||| |||||| ||| || | | Sbjct 285275 GCATCCGATGACCGAGGCATTAAGGTGGTGCGAGAGAAGGTCAAGAGCTTCGCCCAA--G 285218 Query 254178 TCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCG 254237 || || | | | | | ||| |||||||||||| || | | ||||| |||||| Sbjct 285217 GCGCCATCAGCACTGTCAGCGGCCTG-CCGCCTTTCAAGATCATCGTGCTGGATGAGGCG 285159 Query 254238 GACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTT 254297 ||| | ||||||| ||||||||| || || || ||||| | |||||||| ||||| Sbjct 285158 GACTCTATGACGGGCGACGCGCAATCGGCGCTGCGCCGCATGATGGAGAACTACTCCAAG 285099 Query 254298 GTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCT 254357 || ||||| || ||||| | || ||||||||| ||||| | || |||| || Sbjct 285098 GTCACGCGCTTCTGCCTCATCTGTAACTACGTGAGCCGCATCATTGAGCCTGTGGCCTCA 285039 Query 254358 CGGTGCGCCAAGTTTCGATT 254377 || |||||||| ||||| || Sbjct 285038 CGATGCGCCAAATTTCGCTT 285019 Score = 96.9 bits (106), Expect = 7e-15 Identities = 397/609 (65%), Gaps = 24/609 (4%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||||||||| ||||| || Sbjct 371590 ACACCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 371531 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || ||||| |||||||| ||||| ||||| |||||| | |||| ||||| Sbjct 371530 GAGATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCCAGT 371471 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 || |||| | ||| ||||| |||| |||||||| |||| | | | || Sbjct 371470 GAGTACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATG 371411 Query 157424 CCGATGAGCGCGACGGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTG 157482 ||||| ||| | ||||| |||| | || | ||| ||| ||||| ||||||| Sbjct 371410 CCGATCAGCTCCACGGGGAGCG-AGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTC 371352 Query 157483 CTTGAAAATTTCATGAACTC-TCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGA 157541 | || | || || | ||| | ||||||| | ||| | | | ||| |||| Sbjct 371351 ACGCACGATCGCGTGCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGTACATGA 371293 Query 157542 -GAACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACG 157598 | ||| |||| |||| ||| | || ||||| | | |||||| ||||| ||| Sbjct 371292 GGCACGCGAAGTCCGT---GTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGC 371236 Query 157599 ACAAACC---CTTGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCAC 157655 || ||| | ||| | | |||||||| |||||| |||||| |||||| || || Sbjct 371235 TCAGACCAGGCATGA--GGCCG-CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCG 371179 Query 157656 TGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCG-AG--TGAAGCGG 157712 ||| | |||||||| || ||| | | || | ||||| | || ||| | Sbjct 371178 AGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAAC-- 371121 Query 157713 TTTCGGGGTTCA-TCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTC 157771 || || ||| |||||| |||||| | |||||||| || | | || |||||| Sbjct 371120 --ACGAGGGTCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTC 371063 Query 157772 TGGATAGATCGCATGACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGC 157831 | ||| | |||| | ||| || ||| | | |||| ||| ||| || | || ||| Sbjct 371062 TCGATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGC 371003 Query 157832 AGAGAGTAC 157840 || |||||| Sbjct 371002 AGCGAGTAC 370994 >seq1300 Length=5041 Score = 96.9 bits (106), Expect = 7e-15 Identities = 397/609 (65%), Gaps = 24/609 (4%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||||||||| ||||| || Sbjct 1688 ACACCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 1747 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || ||||| |||||||| ||||| ||||| |||||| | |||| ||||| Sbjct 1748 GAGATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCCAGT 1807 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 || |||| | ||| ||||| |||| |||||||| |||| | | | || Sbjct 1808 GAGTACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATG 1867 Query 157424 CCGATGAGCGCGACGGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTG 157482 ||||| ||| | ||||| |||| | || | ||| ||| ||||| ||||||| Sbjct 1868 CCGATCAGCTCCACGGGGAGCG-AGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTC 1926 Query 157483 CTTGAAAATTTCATGAACTC-TCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGA 157541 | || | || || | ||| | ||||||| | ||| | | | ||| |||| Sbjct 1927 ACGCACGATCGCGTGCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGTACATGA 1985 Query 157542 -GAACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACG 157598 | ||| |||| |||| ||| | || ||||| | | |||||| ||||| ||| Sbjct 1986 GGCACGCGAAGTCCGT---GTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGC 2042 Query 157599 ACAAACC---CTTGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCAC 157655 || ||| | ||| | | |||||||| |||||| |||||| |||||| || || Sbjct 2043 TCAGACCAGGCATGA--GGCCG-CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCG 2099 Query 157656 TGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCG-AG--TGAAGCGG 157712 ||| | |||||||| || ||| | | || | ||||| | || ||| | Sbjct 2100 AGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAAC-- 2157 Query 157713 TTTCGGGGTTCA-TCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTC 157771 || || ||| |||||| |||||| | |||||||| || | | || |||||| Sbjct 2158 --ACGAGGGTCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTC 2215 Query 157772 TGGATAGATCGCATGACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGC 157831 | ||| | |||| | ||| || ||| | | |||| ||| ||| || | || ||| Sbjct 2216 TCGATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGC 2275 Query 157832 AGAGAGTAC 157840 || |||||| Sbjct 2276 AGCGAGTAC 2284 >seq2573 Length=963095 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || || |||||||| || || |||||||||||| | | | Sbjct 432613 ATGGCGCAGCGGCTCTGGATGGGCTCGATGATCTTAGTCGAGTTGTTGCAGGCCAGCGCG 432672 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 |||| ||| ||| |||| | | |||||| | || ||||||||||| || | | | Sbjct 432673 AACCTCGTGGTGGCCGAGAAGATCTCCATGGTGCGGCGCAGCGCCTGTTGGGCCGCGGCT 432732 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||||||||| || ||||| || | |||||||| Sbjct 432733 GTCATCGAGTCGGCTTCGTCCAGGATCACAATCTT 432767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073730960339968