Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2569 161 8e-35 seq2529 149 5e-31 seq2563 118 8e-22 >seq2569 Length=732260 Score = 161 bits (178), Expect = 8e-35 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||||||| ||||||||| |||||||||||| |||| |||| |||| ||| Sbjct 55259 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 55200 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| |||||||| || | ||||||||||| Sbjct 55199 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 55140 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | | |||| | |||||| |||| || || |||||| Sbjct 55139 ATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTG 55080 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||| |||||||| ||||| |||||||| Sbjct 55079 CCCGTCAACGTCTTCACGAAGATCTGCATGTT 55048 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||||||| ||||||||| |||||||||||| |||| |||| |||| ||| Sbjct 55487 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 55428 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| |||||||| || | ||||||||||| Sbjct 55427 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 55368 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | | |||| | |||||| |||| || || |||||| Sbjct 55367 ATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTG 55308 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||||| ||||| |||||| Sbjct 55307 CCCGTCAACGTCTTCACGAAGATCTGCATG 55278 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||||||| ||||||||| |||||||||||| |||| |||| |||| ||| Sbjct 55715 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 55656 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| |||||||| || | ||||||||||| Sbjct 55655 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 55596 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | | |||| | |||||| |||| || || |||||| Sbjct 55595 ATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTG 55536 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||||| ||||| |||||| Sbjct 55535 CCCGTCAACGTCTTCACGAAGATCTGCATG 55506 >seq2529 Length=382763 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 59687 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCA 59746 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 59747 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 59806 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| ||| ||||||||| Sbjct 59807 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTG 59866 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| ||||||||||||||| |||||| Sbjct 59867 CCCGTCAAAGTCTTCACAAAGATCTGCATG 59896 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 59915 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCA 59974 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 59975 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 60034 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| ||| ||||||||| Sbjct 60035 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTG 60094 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| ||||||||||||||| |||||| Sbjct 60095 CCCGTCAAAGTCTTCACAAAGATCTGCATG 60124 Score = 145 bits (160), Expect = 6e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 60143 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCA 60202 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 60203 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 60262 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| ||| ||||||||| Sbjct 60263 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTG 60322 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| ||||||||| ||||| |||||| Sbjct 60323 CCCGTCAAAGTCTTCACGAAGATCTGCATG 60352 Score = 145 bits (160), Expect = 6e-30 Identities = 162/214 (76%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 60371 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCA 60430 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 60431 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 60490 Query 45248 ATTTTTTGCTTAAC--CGCCG--CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 ||||| ||||| || | || | | ||| | |||||| |||| ||| ||||| Sbjct 60491 ATTTTCTGCTTCACGTTGTCGATCGAGTCTGAC----GGCTCCACGTCCAAGGTGATCGT 60546 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||||||| ||||||||||||||| |||||| Sbjct 60547 CTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 60580 Score = 141 bits (156), Expect = 7e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| |||||||| |||||||||||| |||| ||| |||| || Sbjct 60599 ACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCA 60658 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 60659 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 60718 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| ||| ||||||||| Sbjct 60719 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTG 60778 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||||| ||||||||| ||||| ||||| ||| Sbjct 60779 CCCGTCAAAGTCTTCACGAAGATCTGCATCTTG 60811 >seq2563 Length=678508 Score = 118 bits (130), Expect = 8e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || ||| |||| || || || || |||||||| | Sbjct 614517 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 614576 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | || ||||||||| ||||| ||||| || Sbjct 614577 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 614636 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||||| ||| || |||| || || |||||||||||||| |||||||||| Sbjct 614637 CAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 614696 Query 45327 AGATTTGCATG-TTGCCT-CAATA 45348 |||| |||||| || ||| ||||| Sbjct 614697 AGATCTGCATGATTCCCTGCAATA 614720 Score = 93.3 bits (102), Expect = 3e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||||||||||||||||||||||||||| || ||| |||| ||| Sbjct 195471 ACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCC 195412 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || |||||||| |||| ||||| ||||| || || Sbjct 195411 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGG 195371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395062796614096