Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq2532 134 1e-26 >seq2532 Length=402062 Score = 134 bits (148), Expect = 1e-26 Identities = 193/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 || |||||| ||||| ||||| ||||| | |||| || || | ||||||| Sbjct 94381 ACACCCGTGCTGCCGAAGCCGCCGGCGCCGCGCGCCGTGTCCTCGATCTCATCCACCTCC 94322 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | ||| || ||| || | |||| || |||||||| | ||||| || ||| Sbjct 94321 TGCACCTCTGGGTACTCGATTTTCTCGAGAATAAGCTGCGCCACGCGGTCCCCGCGCTTA 94262 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 ||| ||| || | | |||| | |||||||| | ||||||||||||||||||||||| Sbjct 94261 ACCGAGAAGTCTTCG--GCCGCATGGTTGAACAAGATCACGCCCACGTTGCCGCGGTAGT 94204 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| ||||| || ||||| ||||||||| | ||| | || || ||||| || | Sbjct 94203 CGGCGTCGATCACACCGGCGCCAGTGTCGATGAATTTCTTAAGTGCGAGTCCGGAACGCG 94144 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | |||||||| |||| || ||| |||||| Sbjct 94143 GCGCCACGCGCGCGTAACATCCAGCGGGAA 94114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430040898442112