Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq2545 86.0 6e-12 >seq2545 Length=498572 Score = 86.0 bits (94), Expect = 6e-12 Identities = 224/335 (67%), Gaps = 10/335 (3%) Strand=Plus/Plus Query 94088 CCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTC-GCAGAGCCGCTGGACGACGGCGCG 94146 |||||||||| |||||| | |||| | | |||| || || | || ||||||| Sbjct 260292 CCCCAGAGCAGGAACACGACGTTGGAG-GCGTCTTTGCTGATCTTGGAGATGACGGCGTC 260350 Query 94147 CACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCAG 94206 || | || |||||||| || ||| ||| || | || || || || || || Sbjct 260351 GGTGAACTGCTCCCAGCCGCGCTTTTTGTGCGAGTTGGCCTCACCTCGACGGACCGTGAG 260410 Query 94207 CGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGG 94266 | ||||| || |||||||| || |||| |||| ||| |||||||| | ||| Sbjct 260411 CACCGTGTG-AGTAGCAGCACTCCCTGGCGGCTCCAGCAGGACAGACAGCCGTGCGAGGG 260469 Query 94267 -CGCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGG 94324 |||| | || ||||| | | | || || | |||| || ||||||||| Sbjct 260470 GCGCGAGATGCCC-----ACGTCACTCATGGCCTCCTTGTAGATATTCTTCAGGCTCGGC 260524 Query 94325 GGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGG 94384 || | | | ||| | || ||| |||| ||||||||| ||||| |||||||||| Sbjct 260525 GGCGGCAGGATGCCGTGACGCACGGAGAAGCTCAGCCCGTGCGCCTGTTGCGGCCCGTGG 260584 Query 94385 TACGGGTCCTGGCCGATGATGACCACCTTGACGTC 94419 ||||||||||| || | || |||||||||| ||| Sbjct 260585 TACGGGTCCTGCCCTAGAATCACCACCTTGAGGTC 260619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458932421900160