Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2516 271 2e-67 seq2512 143 7e-29 >seq2516 Length=319815 Score = 271 bits (300), Expect = 2e-67 Identities = 631/947 (67%), Gaps = 6/947 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || |||||||| ||||| || | | || || || || | ||| ||| |||| || Sbjct 121791 TTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 121732 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || || ||| ||||||| || || ||||| || | ||||| || ||| | Sbjct 121731 TGTTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAG 121672 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || ||||| | || ||||| | || || Sbjct 121671 TGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCC 121612 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||||| ||||| |||||||| |||| || || ||| | | |||||||| | Sbjct 121611 ACGAACAGCTACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGG 121552 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || | | || || | || || |||||||| ||||| ||||||||||| |||| Sbjct 121551 GTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTC 121492 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || ||||| | || ||||| || ||||| || || ||| Sbjct 121491 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAAC 121432 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || || ||||| || || ||||| | || | Sbjct 121431 CACGGCAACGAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTG 121372 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTC 364024 || |||||||| ||||| || | | | || ||| || || ||||| | || | Sbjct 121371 TTCATGAAGCGTGTGGAAGC--GAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCC 121314 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 | || || | ||| ||||| ||||| | | |||| ||||| ||||| || || Sbjct 121313 CCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGG 121254 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 |||| || || ||||| || || ||| |||| ||||| |||||| |||| ||| Sbjct 121253 AGGGGCGCGCGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGC 121194 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 |||||||||| || || | ||| ||||||| || || |||||||||||| |||| Sbjct 121193 AGATTGAGACGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACC 121134 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 ||||| |||| || || || | ||||||| | || ||||||||| || ||||| Sbjct 121133 AGCAGAACCTCGGCACGATCCGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACACGT 121074 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAG 364324 | ||||| ||| || || || ||||| ||||| | || || || |||||| | | Sbjct 121073 CGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGG 121014 Query 364325 ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCG 364384 |||| || || ||||| | || || || || ||| | | || | || | Sbjct 121013 ATGGAGTGTTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGA 120954 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGT 364443 ||||||| || ||| || || || || | | || || || || || ||||| Sbjct 120953 ACAAGGTCATTGACGTCAACTACTA-CCCCGTGGAGGAGGCGCGCAAGTCCAACATGCGC 120895 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || |||||| ||||| |||| || ||||| ||||| || | ||||| Sbjct 120894 CACCGCCCGGTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTAT 120848 >seq2512 Length=294636 Score = 143 bits (158), Expect = 7e-29 Identities = 317/470 (67%), Gaps = 4/470 (1%) Strand=Plus/Minus Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 ||||| ||||| |||||||| || ||||| || || |||||||| ||||| || || Sbjct 174484 CGAAGTGGGTGACCTCGGACCTGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAGGTA 174425 Query 111542 CAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATTG 111600 || |||||||| || | |||||| || || || | || || ||| Sbjct 174424 CACGGACATGCACGCGGACTACACTGGACAGGGCGTGGACCAGCTTGCTGAG-GTGATTC 174366 Query 111601 ATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAAT 111659 | ||| | | || ||||| || || || || | || ||| |||||||| | Sbjct 174365 A-CAAGCTGCGTACGAACCCGACGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGCT 174307 Query 111660 GCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGAC 111719 | || | | |||||||| ||||| || || | | ||||| || || || ||| Sbjct 174306 GATCTGAACGAGATGGCACTGCCACCGTGCCACATGTTCTGCCAATTCTACGTGGCGGAC 174247 Query 111720 GGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTT 111779 ||| | | || || || ||||| ||||| || || || || ||||||||||| |||||| Sbjct 174246 GGGGAGTTGTCGTGTCAGATGTACCAGCGCTCGGCCGACATGGGTCTTGGTGTGCCGTTT 174187 Query 111780 AATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCG 111839 || |||||||| ||||| || ||||| | || | || || | || | ||||| Sbjct 174186 AACATTGCAAGCTACGCGCTGCTTACGCGTCTAGTGGCACAAGTGGCAGGGTTGAAACCT 174127 Query 111840 GGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTT 111899 |||||||| |||||||||||||| || |||||||| || |||||| |||| | ||| Sbjct 174126 GGTGAATTTATTCACGTTATCGGCGACGCGCATGTGTATCTGAACCACGTTGAGCCTCTT 174067 Query 111900 AAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATTCATATCAA 111949 ||| ||| | | ||| ||| ||||||||| |||| || || Sbjct 174066 CAAAAGCAGCTTACGCGTTCACCGCGGCCATTCCCAACGCTTCACATTAA 174017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303310582814432