Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2512 109 5e-19 >seq2512 Length=294636 Score = 109 bits (120), Expect = 5e-19 Identities = 365/561 (65%), Gaps = 29/561 (5%) Strand=Plus/Plus Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 ||||| ||||||||||| || || || | ||||||||| |||| | ||| |||| |||| Sbjct 174173 TAGCTTGCAATGTTAAACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGA 174232 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || | ||| ||||| || || || ||||| || |||| ||| || || || || ||| Sbjct 174233 CACGACAACTCCCCGTCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCC 174292 Query 20396 ATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTA 20455 ||| || || || |||||||||||| ||| | ||| | | || ||| || Sbjct 174293 ATCTCGTTCAGATCAGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTC 174352 Query 20456 TT----TTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTC 20511 | | | |||| | | | | ||||| | ||||| || || ||||| Sbjct 174353 GTACGCAGCTTGTGAATC----ACCTCAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTC 174408 Query 20512 AGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCC 20571 || | | |||| |||| || ||||| || | ||||||||| ||||| |||||||| Sbjct 174409 CGCGTGCATGTCCGTGTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCC 174468 Query 20572 CAAATCCCCCTCCCTTCTGTGCG---CCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCC 20628 | || || | |||| | ||| || || || | | ||| |||| | ||| || Sbjct 174469 GAGGTCACC--CACTTC-GCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCC 174525 Query 20629 ATTTTTGTCCCATATCTTGA-CTCCTGTTCTTGAA-----AGCTCCCTGGAGTCAGTACT 20682 ||| |||||| || | | |||| | ||| | || | || | ||| Sbjct 174526 ATTCCCGTCCCAGATGTGAATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTC------ 174579 Query 20683 CCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGT 20742 || | | ||||| |||||||| | | | ||||| ||||| ||||| ||||| || || Sbjct 174580 GCCGCTAATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGT 174639 Query 20743 TAGTA-AGGGA--AAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAG 20799 || | |||| | || || | |||||| ||| ||| ||||| | || | Sbjct 174640 GAGCAGCGGGAACACGTTCTCTCTCAGACTGAACCGCATCTGTGCTCCAAACACCGACAA 174699 Query 20800 GGTGCCTATGCCGGTGCGGTC 20820 ||||| |||| |||||||| Sbjct 174700 CGTGCCAGTGCCCGTGCGGTC 174720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441358587795840