Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2563 102 6e-17 seq2529 95.1 1e-14 seq2569 87.8 1e-12 >seq2563 Length=678508 Score = 102 bits (112), Expect = 6e-17 Identities = 93/115 (81%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || |||||||||||||||||||||||||| || | Sbjct 195490 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGA 195431 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| |||| ||||||||||| || ||||| |||||||| || Sbjct 195430 AAGAGTGCGGC-CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 195377 >seq2529 Length=382763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 59668 ACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GC 59726 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || |||| || | |||||||| || || |||||||||||||| || || Sbjct 59727 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 59786 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | || || |||||| |||||| ||||| Sbjct 59787 GGATGCCTTCCTTGTCCTGAATTTTCTGCTT 59817 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 59897 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 59955 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || |||||||||||||| || ||| Sbjct 59956 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 60015 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| |||||| ||||| Sbjct 60016 GATGCCTTCCTTGTCCTGAATTTTCTGCTT 60045 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 60125 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 60183 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || |||||||||||||| || ||| Sbjct 60184 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 60243 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| |||||| ||||| Sbjct 60244 GATGCCTTCCTTGTCCTGAATTTTCTGCTT 60273 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 60353 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 60411 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || |||||||||||||| || ||| Sbjct 60412 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 60471 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| |||||| ||||| Sbjct 60472 GATGCCTTCCTTGTCCTGAATTTTCTGCTT 60501 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| |||||||| |||||||| || || Sbjct 60581 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTC-GCT 60639 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || |||||||||||||| || ||| Sbjct 60640 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 60699 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| |||||| ||||| Sbjct 60700 GATGCCTTCCTTGTCCTGAATTTTCTGCTT 60729 >seq2569 Length=732260 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||| || ||||| ||||||||| |||||||| || || Sbjct 55277 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 55219 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || ||||| |||||||| || ||| Sbjct 55218 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 55159 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| ||||| ||||| ||||| Sbjct 55158 GATGCCCTCCTTGTCTTGGATTTTCTGCTT 55129 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||| || ||||| ||||||||| |||||||| || || Sbjct 55505 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 55447 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || ||||| |||||||| || ||| Sbjct 55446 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 55387 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| ||||| ||||| ||||| Sbjct 55386 GATGCCCTCCTTGTCTTGGATTTTCTGCTT 55357 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||||||||| || ||||| ||||||||| |||||||| || || | || || Sbjct 55724 AGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCG 55666 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| |||| ||||||||||| || ||||| |||||||| || ||| | || ||| Sbjct 55665 ACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTC 55606 Query 34029 TTTGTCCATAATTTTTTGCTT 34049 ||||| ||||| ||||| Sbjct 55605 CTTGTCTTGGATTTTCTGCTT 55585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397049934225952