Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2565 158 3e-33 seq2561 104 5e-17 seq1300 104 5e-17 seq1932 96.9 8e-15 >seq2565 Length=689251 Score = 158 bits (174), Expect = 3e-33 Identities = 425/639 (67%), Gaps = 31/639 (5%) Strand=Plus/Minus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||| | || || || |||||||| |||||||||| | | ||||| Sbjct 21622 CTGCTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGCGTC---TCGTA 21566 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 || || || ||| || |||| ||||||||| || |||||||| ||||| || | || Sbjct 21565 GTGAATGATGTTGGTACAGACAGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGCT 21506 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 || |||| | ||| | ||||||| | |||||| ||||| ||| | Sbjct 21505 CGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCCAA 21446 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 |||||| |||||||| ||||| || || | | ||| ||| | ||||| ||||| ||||| Sbjct 21445 ATGGTTCGTCGGCTCATCAAGGAGCAGGATGTCTGCCTTCTGCAGCATGGCACGAGCAAG 21386 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAAT 334021 | |||||||| ||||| || || ||||| || | || ||| || || Sbjct 21385 CTCAAGTTTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGCAT 21332 Query 334022 ATCA------AAGCCAACCGATTCTAGAGTAGTTACG-ATCTTTTCACGAGACCAAATGT 334074 || ||||| || | | || || || || | || || |||| | ||| Sbjct 21331 CTCCGGGGTGAAGCCCACGCTTCCGAGCGT-GTCACACACCTCGTCGCGAGG---AGTGT 21276 Query 334075 T-TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGAC 334133 | ||| | || | || || || |||||||| | | | || | || ||||| Sbjct 21275 TCTTCAGGTCCTCATCCACCA--GG--ATGAAGTCCACCACGGACAACTCAGCCTCGGAA 21220 Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCCTT 334191 | | || | ||| || ||| | |||| |||| | | | || | ||||| || | Sbjct 21219 GCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGAGCGGCTG--GGGAAGCCCT 21162 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 | ||||||||||| ||||||||||||||||| || ||||| ||||| || || | Sbjct 21161 CGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCCGC 21102 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAA-CCGCGTATTGTTCAGAAGAATTTTT 334310 |||||||||| |||| |||||||||| | ||| || | |||||||| ||||| | Sbjct 21101 ACAGACCGTAACGGTGGCCACGCTTCA-AGCGAAGGCGGGCGTTGTTCAGCAGAATCATA 21043 Query 334311 CCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 ||||| || || || || ||||| || | ||||| ||| Sbjct 21042 CCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 21004 Score = 93.3 bits (102), Expect = 9e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||| | ||| ||| || Sbjct 22030 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAG 21971 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| |||||||||||||| ||||| ||||| || || | |||||| || || Sbjct 21970 GTGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTG 21911 Query 333434 CTTCCAAAC 333442 |||||| || Sbjct 21910 CTTCCACAC 21902 >seq2561 Length=604796 Score = 104 bits (114), Expect = 5e-17 Identities = 272/410 (66%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || ||| | || || || |||||| ||||||| ||||| ||| || Sbjct 371159 CGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 371218 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | |||||||| || | | || |||||| ||||||| || ||||||||| | ||| Sbjct 371219 CCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACAC 371278 Query 243438 ACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTC 243495 | |||| ||| || ||||| || ||| | ||||||||| || || || || Sbjct 371279 GGACTTCGCGTGC-CTCATGTACTCGAAGTTGGTGAACAAGCTGCCGGA-GAGCCGCGTG 371336 Query 243496 AAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA 243555 | ||| | || || || | | || | || ||| | ||||| | | || Sbjct 371337 CACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCC 371396 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 ||| || ||||||||||||| |||||| | ||||||||||| ||||| |||||| Sbjct 371397 GTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGAC 371456 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | | | | || ||| || | |||||| |||||||| || | || Sbjct 371457 CGCCTGCTGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGG 371516 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || ||||| || || || || ||||||||||| ||||| || Sbjct 371517 ATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 371566 >seq1300 Length=5041 Score = 104 bits (114), Expect = 5e-17 Identities = 272/410 (66%), Gaps = 4/410 (1%) Strand=Plus/Minus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || ||| | || || || |||||| ||||||| ||||| ||| || Sbjct 2119 CGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 2060 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | |||||||| || | | || |||||| ||||||| || ||||||||| | ||| Sbjct 2059 CCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACAC 2000 Query 243438 ACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTC 243495 | |||| ||| || ||||| || ||| | ||||||||| || || || || Sbjct 1999 GGACTTCGCGTGC-CTCATGTACTCGAAGTTGGTGAACAAGCTGCCGGA-GAGCCGCGTG 1942 Query 243496 AAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA 243555 | ||| | || || || | | || | || ||| | ||||| | | || Sbjct 1941 CACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCC 1882 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 ||| || ||||||||||||| |||||| | ||||||||||| ||||| |||||| Sbjct 1881 GTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGAC 1822 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | | | | || ||| || | |||||| |||||||| || | || Sbjct 1821 CGCCTGCTGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGG 1762 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || ||||| || || || || ||||||||||| ||||| || Sbjct 1761 ATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 1712 >seq1932 Length=9237 Score = 96.9 bits (106), Expect = 8e-15 Identities = 265/401 (66%), Gaps = 4/401 (1%) Strand=Plus/Minus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || ||| | || || || |||||| ||||||| ||||| ||| || Sbjct 401 CGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 342 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | |||||||| || | | || |||||| ||||||| || ||||||||| | ||| Sbjct 341 CCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACAC 282 Query 243438 ACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTC 243495 | |||| ||| || ||||| || ||| | ||||||||| || || || || Sbjct 281 GGACTTCGCGTGC-CTCATGTACTCGAAGTTGGTGAACAAGCTGCCGGA-GAGCCGCGTG 224 Query 243496 AAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA 243555 | ||| | || || || | | || | || ||| | ||||| | | || Sbjct 223 CACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCC 164 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 ||| || ||||||||||||| |||||| | ||||||||||| ||||| |||||| Sbjct 163 GTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGAC 104 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | | | | || ||| || | |||||| |||||||| || | || Sbjct 103 CGCCTGCTGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGG 44 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 ||||| | || ||||| || || || || ||||||||||| Sbjct 43 ATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102843599445600