Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2516 260 2e-64 seq2561 187 3e-42 seq1300 187 3e-42 seq1932 172 7e-38 seq2559 98.7 1e-15 >seq2516 Length=319815 Score = 260 bits (288), Expect = 2e-64 Identities = 1124/1754 (64%), Gaps = 76/1754 (4%) Strand=Plus/Plus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | || ||| Sbjct 120169 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTT 120228 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | | || || | ||| | ||||| ||| || ||| || || Sbjct 120229 GCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCC 120288 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 ||| ||||||| || || | ||| ||||| |||||| |||||||| || |||| Sbjct 120289 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 120348 Query 113782 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATGGAGCCACCCGCCTTGAC 113838 | ||| | | || || || | ||| || || | ||||||||| | | Sbjct 120349 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAG 120405 Query 113839 CATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 113898 || | | || || | ||||| || | || | || |||| || ||| | Sbjct 120406 AATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTA 120465 Query 113899 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 113958 ||| || || | |||||||| || || ||| | || || || | |||||| Sbjct 120466 CTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTA 120525 Query 113959 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGC 114018 ||||| | | |||||||||| ||||| || || || || || || |||||||| || || Sbjct 120526 CGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGC 120585 Query 114019 CATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC 114078 || ||| || ||| |||| || | | | | | |||||||| || |||| || Sbjct 120586 CACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATC 120645 Query 114079 GTAGTTG-----AG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 114132 | | || | || | ||| ||||| || ||||||| |||||| | | Sbjct 120646 CCACAAGCCCGAAGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATACCCTTGCT 120702 Query 114133 GGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 114192 ||| |||||||||| || |||||||| |||||| | |||| | || | || | Sbjct 120703 GGCAGGCGATCCCTGGAACGTCTCGTACGGGCCC---AGCTCC------TTGGCGATCTC 120753 Query 114193 C-TCGAGGGCT--------GCGTGATACATTGTCTCAAAAATGCGAGCATTCAT--TGCC 114241 | |||||| || |||| || || || || || ||| ||||| || Sbjct 120754 CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTTTCGAAGATG------TTCATGTTGAG 120807 Query 114242 TT---GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGA 114295 || || || | || || ||||| ||| || | |||||| ||||||||||| Sbjct 120808 TTCACGGGCTTGCGGGCTCTCGAACGCATAGTT--CATGAGGATAAATGCATCCGCGAGA 120865 Query 114296 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 114355 || ||||| || | |||| ||||| || | ||| || ||||| || || ||||||| Sbjct 120866 CCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACG 120925 Query 114356 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 114415 || || | || || || ||| | || | || ||| || ||||| || | || Sbjct 120926 GGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCG 120985 Query 114416 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 | ||||| | ||| | || | || | || | ||| |||| || ||||| | Sbjct 120986 TACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACA 121039 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 |||||||| || ||||| | |||||| |||||||| ||||| || ||| Sbjct 121040 GACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCAC 121099 Query 114536 AAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || || ||| || ||||| | ||||| || || ||||| ||| ||| Sbjct 121100 AAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCG 121156 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 |||||||| |||||| | ||| |||||||| | || | | || || || ||| Sbjct 121157 TCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA- 121215 Query 114653 ACATCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 || | || | |||| | | | ||| || |||||||||| ||||||||| ||| Sbjct 121216 -CAGCTGCTG--GGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTA 121272 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 || | || ||||| || ||| | ||| |||| || || |||| || |||||||| Sbjct 121273 CAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAA 121332 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 || ||| | || | | || |||||||||||||| || || |||| ||| ||||| Sbjct 121333 AAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGC 121392 Query 114829 TGAGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 114887 ||||||| || || || | || | || | || || || |||| ||||| | Sbjct 121393 GTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGCTCCAGGA 121451 Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 114944 | || | | || ||||||||||| |||||||| | |||| || || || || | Sbjct 121452 ACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGC 121511 Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 || |||||| ||||| | || ||| |||| || || | ||||| || ||||| | Sbjct 121512 CTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCC 121571 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 | | ||| || || || || || || || |||| | || | || || Sbjct 121572 CGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATAC 121631 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 || |||||||| || |||||||| ||||| |||||||| | |||| || |||| | Sbjct 121632 TAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAA 121691 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184 | || || |||||||| ||| | || | ||||| || ||||| || || | | Sbjct 121692 TGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCG 121751 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTA 115243 | || || ||||| ||||| || || |||||||| | || | || | || ||||| Sbjct 121752 GCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGC 121810 Query 115244 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303 || || || | || | || | ||||||| | ||||||||| | || || ||||| Sbjct 121811 TCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATG 121870 Query 115304 AACATGTATTGGGG 115317 | ||| | ||||| Sbjct 121871 ATCATCTGCTGGGG 121884 >seq2561 Length=604796 Score = 187 bits (206), Expect = 3e-42 Identities = 372/538 (69%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 371587 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 371528 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG--GCACCCCAATCT 125864 || | ||||| | || || |||||||| ||| | || | | |||||| | | Sbjct 371527 ATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC-AGTGA 371469 Query 125865 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 125924 || || || || || | ||| |||| ||||||| |||| | |||||||||| | Sbjct 371468 GTAC-AGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGC 371410 Query 125925 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984 |||| || | ||||||| ||| | |||| | | |||||| |||| || || | Sbjct 371409 CGATCAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCAC 371350 Query 125985 GCACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGA-GTTC 126042 ||||||| ||||| | | | | || ||| | | || ||| || | | | | Sbjct 371349 GCACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGG 371291 Query 126043 CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 126102 |||| | || || ||| | |||||||| ||| |||||| || |||||||||| ||| Sbjct 371290 CACG-CGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAG 371232 Query 126103 TCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAA 126162 || |||||||| || |||||||| | |||||| || | || || |||||||||||||| Sbjct 371231 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAA 371172 Query 126163 GATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGT 126221 || |||||||| |||||||| | |||||||| | |||| || || | || Sbjct 371171 AATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGT 371113 Query 126222 CAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 || ||||||| | |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 371112 CACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 371055 >seq1300 Length=5041 Score = 187 bits (206), Expect = 3e-42 Identities = 372/538 (69%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 1691 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 1750 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG--GCACCCCAATCT 125864 || | ||||| | || || |||||||| ||| | || | | |||||| | | Sbjct 1751 ATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC-AGTGA 1809 Query 125865 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 125924 || || || || || | ||| |||| ||||||| |||| | |||||||||| | Sbjct 1810 GTAC-AGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGC 1868 Query 125925 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984 |||| || | ||||||| ||| | |||| | | |||||| |||| || || | Sbjct 1869 CGATCAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCAC 1928 Query 125985 GCACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGA-GTTC 126042 ||||||| ||||| | | | | || ||| | | || ||| || | | | | Sbjct 1929 GCACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGG 1987 Query 126043 CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 126102 |||| | || || ||| | |||||||| ||| |||||| || |||||||||| ||| Sbjct 1988 CACG-CGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAG 2046 Query 126103 TCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAA 126162 || |||||||| || |||||||| | |||||| || | || || |||||||||||||| Sbjct 2047 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAA 2106 Query 126163 GATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGT 126221 || |||||||| |||||||| | |||||||| | |||| || || | || Sbjct 2107 AATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGT 2165 Query 126222 CAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 || ||||||| | |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 2166 CACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 2223 >seq1932 Length=9237 Score = 172 bits (190), Expect = 7e-38 Identities = 351/510 (69%), Gaps = 10/510 (2%) Strand=Plus/Plus Query 125775 TCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTTCT 125834 ||||||||||||| ||||| || | || ||| | ||||| | || || ||||||| Sbjct 1 TCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATCCAGTCGAACGGGTTCT 60 Query 125835 TTGAGTTCCAAATTGTTG--GCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 125892 | ||| | || | | |||||| | | || || || || || | ||| |||| Sbjct 61 TCACGTTGTAGATCTTGGATGCACCC-AGTGAGTAC-AGCAGGCGGTCGGCCACGAACTC 118 Query 125893 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 125952 ||||||| |||| | |||||||||| ||||| || | ||||||| ||| Sbjct 119 GATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGCGAGTCGCT 178 Query 125953 GATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGTCCACCC- 126011 | |||| | | |||||| |||| || || |||||||| ||||| | | | | || Sbjct 179 CACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTGCACGCGGCTCTCCGG 238 Query 126012 CAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTCTTGGTGGAGACCCTCG 126070 ||| | | || ||| || | | | | |||| | || || ||| | |||||| Sbjct 239 CAGCT-TGTTCACCAACTTCGAGTACATGAGGCACG-CGAAGTCCGTGTGCATGCCCTCG 296 Query 126071 TCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAAC 126130 || ||| |||||| || |||||||||| ||| || |||||||| || |||||||| | | Sbjct 297 TCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGC 356 Query 126131 CAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAG 126190 ||||| || | || || |||||||||||||| || |||||||| |||||||| | Sbjct 357 CAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGC 416 Query 126191 AGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTCAAACCACTTCATCGCCCACTGCGCCTT 126249 |||||||| | |||| || || | |||| ||||||| | |||||| | ||||| Sbjct 417 AGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACTTGAGCGCCCAGCGGGCCTT 475 Query 126250 TTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| | ||||||| |||| ||| || Sbjct 476 CTTCTCCACGCACGGGATCGTCTCGATGGC 505 >seq2559 Length=596890 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 172763 AGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 172822 || |||||||| | ||||| || || || | || || || ||||| ||||||||| Sbjct 103791 AGCTGCGCCACGGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 103850 Query 172823 TAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 172882 || |||||||| |||||||| | |||||||| || || || | ||| || ||||||||| Sbjct 103851 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 103910 Query 172883 TCCGTCACGATGAGCGTACACT 172904 || |||| || |||| |||| Sbjct 103911 TCAGTCAAAATCAGCGAGCACT 103932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597334365214080