Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2569 125 8e-24 seq2563 116 4e-21 seq2529 114 1e-20 >seq2569 Length=732260 Score = 125 bits (138), Expect = 8e-24 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 55266 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 55207 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||||| || | || |||||| Sbjct 55206 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 55147 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| |||||| || || | ||| | | | | ||| | ||||| || | ||||| Sbjct 55146 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGA 55088 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 |||| |||||||| | |||||| || ||||| ||||| ||| Sbjct 55087 TGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTTC 55047 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 55494 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 55435 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||||| || | || |||||| Sbjct 55434 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 55375 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| |||||| || || | ||| | | | | ||| | ||||| || | ||||| Sbjct 55374 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGA 55316 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||| | |||||| || ||||| ||||| Sbjct 55315 TGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 55279 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 55722 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 55663 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||||| || | || |||||| Sbjct 55662 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 55603 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| |||||| || || | ||| | | | | ||| | ||||| || | ||||| Sbjct 55602 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGA 55544 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||| | |||||| || ||||| ||||| Sbjct 55543 TGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 55507 >seq2563 Length=678508 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 614517 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 614576 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || ||||||||| |||||| || |||| | | | Sbjct 614577 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 614635 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || || || || | ||||||||| |||||||| || ||||| ||| Sbjct 614636 TCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 614695 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 614696 AAGATCTGCAT 614706 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| ||||||||||| ||||| ||||| || | ||||| || | Sbjct 195478 ACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCC 195419 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || |||||||| || ||||| || || ||||||||||| Sbjct 195418 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 195377 >seq2529 Length=382763 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 59680 ACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 59739 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 59740 GTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 59799 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || || | ||| | | | || ||| || ||||| || | |||| Sbjct 59800 GTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGA 59858 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| | ||||| |||||||| ||||| Sbjct 59859 TCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 59895 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 59908 ACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 59967 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 59968 GTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 60027 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || || | ||| | | | || ||| || ||||| || | |||| Sbjct 60028 GTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGA 60086 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| | ||||| |||||||| ||||| Sbjct 60087 TCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 60123 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 60364 ACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 60423 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 60424 GTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 60483 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || || | ||| | | | || ||| || ||||| || | |||| Sbjct 60484 GTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCTGACGGCTCCACGTCCAAGGTGA 60542 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| | ||||| |||||||| ||||| Sbjct 60543 TCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 60579 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 60136 ACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 60195 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 60196 GTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 60255 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || || | ||| | | | || ||| || ||||| || | |||| Sbjct 60256 GTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGA 60314 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| | ||||| || ||||| ||||| Sbjct 60315 TCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 60351 Score = 105 bits (116), Expect = 7e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || ||||| || || ||||| || ||| || || | Sbjct 60592 ACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 60651 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 60652 GTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 60711 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || || | ||| | | | || ||| || ||||| || | |||| Sbjct 60712 GTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGA 60770 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || |||||||| | ||||| || ||||| ||||| || Sbjct 60771 TCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 60810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543195308547840