Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2569 156 4e-33 seq2529 141 9e-29 seq2516 109 5e-19 seq2563 98.7 9e-16 seq2561 96.9 3e-15 seq1300 96.9 3e-15 >seq2569 Length=732260 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | |||| |||||| || | ||||||||| || || || ||||| |||| Sbjct 55734 TCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 55675 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 55674 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 55615 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| | Sbjct 55614 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCA 55556 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | || ||||| |||| || || || || ||||||||| Sbjct 55555 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 55506 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||||||||| || || || ||||| |||| | Sbjct 55277 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 55218 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 55217 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 55158 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| || Sbjct 55157 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCAC 55099 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| |||| || || || || ||||||||| Sbjct 55098 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 55050 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||||||||| || || || ||||| |||| | Sbjct 55505 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 55446 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 55445 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 55386 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| || Sbjct 55385 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCAC 55327 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| |||| || || || || ||||||||| Sbjct 55326 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 55278 >seq2529 Length=382763 Score = 141 bits (156), Expect = 9e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||| || || || ||||| |||| || |||||| Sbjct 59681 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 59740 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 59741 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 59800 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | ||| | Sbjct 59801 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGAT 59859 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||| ||| || ||||| ||||||||| Sbjct 59860 CGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 59896 Score = 141 bits (156), Expect = 9e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||| || || || ||||| |||| || |||||| Sbjct 59909 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 59968 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 59969 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60028 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | ||| | Sbjct 60029 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGAT 60087 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||| ||| || ||||| ||||||||| Sbjct 60088 CGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 60124 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||| || || || ||||| |||| || |||||| Sbjct 60137 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 60196 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 60197 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60256 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | ||| | Sbjct 60257 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGAT 60315 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||| ||| || || || ||||||||| Sbjct 60316 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 60352 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||| || || || ||||| |||| || |||||| Sbjct 60365 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 60424 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 60425 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60484 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||| | ||| || || | ||| | Sbjct 60485 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCTGACGGCTCCACGTCCAAGGTGAT 60543 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||| ||| || ||||| ||||||||| Sbjct 60544 CGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 60580 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | |||||| || || || || ||||| |||| || |||||| Sbjct 60593 CGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 60652 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 60653 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60712 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | ||| | Sbjct 60713 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGAT 60771 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| |||| ||| || || || |||||||| Sbjct 60772 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 60807 >seq2516 Length=319815 Score = 109 bits (120), Expect = 5e-19 Identities = 335/511 (66%), Gaps = 13/511 (3%) Strand=Plus/Plus Query 145701 CGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCG 145760 ||||||| | |||| ||| ||||||||||| | || | || ||| | ||| Sbjct 120111 CGAGGCC-CTGCTT----GTCCACGGTGAACTGGATGGCGTCGGCTTTCGGGCGTCCGCG 120165 Query 145761 CAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA- 145819 || ||||||||||| ||||||||| |||| ||| | ||| ||||| ||| || || Sbjct 120166 CATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAG 120225 Query 145820 --TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAA 145877 || | | | ||| || ||||| | | || || || |||||||| |||| Sbjct 120226 CTTG--CTAAT-CGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATG-T 120281 Query 145878 AGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTT 145936 ||| ||| ||||| || | || ||| | || | ||| || || ||||| | || | Sbjct 120282 AGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCT 120341 Query 145937 TAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGG 145996 | | |||||||| || | || || | | |||||||| || ||| || | Sbjct 120342 TGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAG 120401 Query 145997 CCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGA 146056 ||| || | |||||||| || || || | ||| || || | || |||| |||| Sbjct 120402 CCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGA 120461 Query 146057 GATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGG 146116 | |||| ||| || | | ||||| || || || ||||| | |||| ||| | Sbjct 120462 GGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACG 120521 Query 146117 TGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGT 146176 || ||||||||| ||||| ||||| || | ||||| ||||||| || || ||||| Sbjct 120522 TGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCG 120581 Query 146177 ACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| || | ||||| | | |||||| Sbjct 120582 GAGCCACGAGGAGCGAGTTGCGGATGCCGTG 120612 >seq2563 Length=678508 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 614519 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 614578 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||| ||||||||| |||||||||||||| | || Sbjct 614579 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 614638 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 614639 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 614698 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 614699 ATCTGCATG 614707 >seq2561 Length=604796 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/169 (74%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| | | | | ||| | |||||||||| || || |||||||||||||| || Sbjct 371409 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTA 371467 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| | |||| ||||| ||| || |||| || ||||| | ||| | | | Sbjct 371468 CTCACTGGGTGCATCC-AAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 371526 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| |||||||||||||||| |||||||||||||| ||||| || Sbjct 371527 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 371575 >seq1300 Length=5041 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/169 (74%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| | | | | ||| | |||||||||| || || |||||||||||||| || Sbjct 1869 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTA 1811 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| | |||| ||||| ||| || |||| || ||||| | ||| | | | Sbjct 1810 CTCACTGGGTGCATCC-AAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 1752 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| |||||||||||||||| |||||||||||||| ||||| || Sbjct 1751 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485488874240