Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2516 235 7e-57 seq2561 165 1e-35 seq1300 165 1e-35 seq2559 98.7 1e-15 >seq2516 Length=319815 Score = 235 bits (260), Expect = 7e-57 Identities = 1118/1752 (64%), Gaps = 72/1752 (4%) Strand=Plus/Plus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | || ||| Sbjct 120169 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTT 120228 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | || || | ||| | ||||| ||| || ||| || || Sbjct 120229 GCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCC 120288 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || ||||||| || || | ||| ||||| |||||| |||||||| || |||| Sbjct 120289 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 120348 Query 115743 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATAGAGCCACCTGCCTTGAC 115799 | ||| | | || || || | ||| || || | |||||||| | | Sbjct 120349 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAG 120405 Query 115800 CATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 || | | || || | ||||| || | || | || |||| || ||||| Sbjct 120406 AATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTA 120465 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTA 115919 ||| || || | |||||||| || || ||| | || ||||| | |||||| Sbjct 120466 CTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTA 120525 Query 115920 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 115979 ||||| | | |||||||||| ||||| || || || || || || |||||||| || || Sbjct 120526 CGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGC 120585 Query 115980 CATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC 116039 || ||| || |||||||| || | | | | |||||||| || |||| || Sbjct 120586 CACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATC 120645 Query 116040 GTAGTTGAGCTTTGTC----TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACG 116095 | | | | | | | | ||||||| || ||||||| |||||| | | | Sbjct 120646 CCACAAGCCCGAAGACGGGGTGACGC-CCCACATGTCGAACTGGAAGATACCCTTGCTGG 120704 Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCC- 116154 | |||||||||| || ||||| || |||||| | |||| | || | || || Sbjct 120705 CAGGCGATCCCTGGAACGTCTCGTACGGGCCC---AGCTCC------TTGGCGATCTCCA 120755 Query 116155 TCGAGGGCT--------GCGTGATACATTGTCTCAAAAATGCGAGCATTCAT--TGCCTT 116204 |||||| || |||| || || || || || ||| ||||| || || Sbjct 120756 TCGAGGTCTCCATAGAAGCGTAGTAGATCGTTTCGAAGATG------TTCATGTTGAGTT 120809 Query 116205 ---GGCCTCGTCGGAA-TCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCT 116259 || || | || || ||||| | | || | |||||| ||||||||||||| Sbjct 120810 CACGGGCTTGCGGGCTCTCGAACGC-ATAGTTCATGAGGATAAATGCATCCGCGAGACCC 120868 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 116319 ||||| || | |||| ||||| || | ||| || ||||| || || ||||||||| Sbjct 120869 TGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGG 120928 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || || || ||| | || | || ||| || ||||| || | || | Sbjct 120929 TAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTAC 120988 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 ||||| | ||| | || | || | || | ||| |||| || ||||| | ||| Sbjct 120989 AGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACAGAC 121042 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 ||||| || ||||| | |||||| |||||||| ||||| || ||||| Sbjct 121043 GCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAG 121102 Query 116500 TTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 || ||| || ||||| | ||||| || || ||||| ||| ||| ||| Sbjct 121103 TTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCC 121159 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACA 116616 ||||| ||||| | ||| |||||||| | || | | || || || ||| || Sbjct 121160 TTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CA 121217 Query 116617 TCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672 | || | |||| | | | ||| || |||||||||| ||||||||| ||| || Sbjct 121218 GCTGCTG--GGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTACAG 121275 Query 116673 GGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGA 116731 | ||| ||||| || ||| |||| ||| |||| || || |||| || || ||||| | Sbjct 121276 AGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAA 121334 Query 116732 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 | ||| | || | | || || ||||||||||| || || |||| ||| || || Sbjct 121335 GGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGT 121394 Query 116792 AGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 ||||||| || || || | || | || | || || || |||| ||||| || Sbjct 121395 AGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAAC 121453 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGA 116907 || | | || ||||||||||| |||||||| | |||| || || ||||| | Sbjct 121454 TCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCT 121513 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| ||||| | ||||| | || || || | ||||| || ||||| || Sbjct 121514 CCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCG 121573 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027 | ||| || || || || || || || |||| | || | ||| || Sbjct 121574 TTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTA 121633 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 || |||||||| || |||||||| ||||| ||||||| | |||| || |||| || Sbjct 121634 ATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATG 121693 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || |||||||| ||| | || | ||||| || ||||| || || | || Sbjct 121694 CCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGC 121753 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATC 117206 || || ||||| ||||| || || |||||||| | || | || | || ||||| || Sbjct 121754 GTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTC 121812 Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 || || | || | | | ||||||| | ||||||||| | | || ||||| | Sbjct 121813 ATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGAT 121872 Query 117267 CATGTATTGGGG 117278 ||| | ||||| Sbjct 121873 CATCTGCTGGGG 121884 >seq2561 Length=604796 Score = 165 bits (182), Expect = 1e-35 Identities = 367/538 (68%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 371587 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 371528 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 127337 || | ||||| | || || |||||||| ||| | | ||| ||| |||| | Sbjct 371527 ATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCA-CCCAGTGA 371469 Query 127338 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 127397 | | || || || || | ||| |||| ||||||| |||| | |||||||||| | Sbjct 371468 G-TACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGC 371410 Query 127398 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 |||| || | ||||||| ||| | |||| | | |||||| ||||||| || | Sbjct 371409 CGATCAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCAC 371350 Query 127458 GTACGATGGCGTG-AATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGA-GTTC 127515 | ||||| ||||| | | || | ||| | | || || || | | | | Sbjct 371349 GCACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGG 371291 Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 ||| || || || ||| | |||||||| ||| |||||| || |||||||||| ||| Sbjct 371290 CAC-GCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAG 371232 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 ||| |||||||| || |||||||| | |||||| || | || || || || |||||||| Sbjct 371231 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAA 371172 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTAT 127694 || |||||||| |||||||| | |||||||| | |||| || || | | Sbjct 371171 AATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGT 371113 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || ||||||| | |||||| | ||||| ||||| | || |||| |||| ||| || Sbjct 371112 CACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 371055 >seq1300 Length=5041 Score = 165 bits (182), Expect = 1e-35 Identities = 367/538 (68%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 1691 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 1750 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 127337 || | ||||| | || || |||||||| ||| | | ||| ||| |||| | Sbjct 1751 ATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCA-CCCAGTGA 1809 Query 127338 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 127397 | | || || || || | ||| |||| ||||||| |||| | |||||||||| | Sbjct 1810 G-TACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGC 1868 Query 127398 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 |||| || | ||||||| ||| | |||| | | |||||| ||||||| || | Sbjct 1869 CGATCAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCAC 1928 Query 127458 GTACGATGGCGTG-AATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGA-GTTC 127515 | ||||| ||||| | | || | ||| | | || || || | | | | Sbjct 1929 GCACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGG 1987 Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 ||| || || || ||| | |||||||| ||| |||||| || |||||||||| ||| Sbjct 1988 CAC-GCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAG 2046 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 ||| |||||||| || |||||||| | |||||| || | || || || || |||||||| Sbjct 2047 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAA 2106 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTAT 127694 || |||||||| |||||||| | |||||||| | |||| || || | | Sbjct 2107 AATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGT 2165 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || ||||||| | |||||| | ||||| ||||| | || |||| |||| ||| || Sbjct 2166 CACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 2223 >seq2559 Length=596890 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 176783 AGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCG 176842 || |||||||| | || || || || || | || ||||| ||||| ||||||||| Sbjct 103791 AGCTGCGCCACGGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 103850 Query 176843 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 176902 || |||||||| |||||||| | |||||||| || || || | ||| || ||||||||| Sbjct 103851 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 103910 Query 176903 TCCGTCACGATGAGCGTACACT 176924 || |||| || |||| |||| Sbjct 103911 TCAGTCAAAATCAGCGAGCACT 103932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487445068160