Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2516 190 3e-43 seq2561 172 9e-38 seq1300 172 9e-38 seq1932 165 1e-35 >seq2516 Length=319815 Score = 190 bits (210), Expect = 3e-43 Identities = 414/610 (68%), Gaps = 15/610 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| |||||||| ||||||| |||| | || || || |||||||| Sbjct 120121 CTTGTCCACGGTGAACTGGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 120177 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||||||| ||| |||| | ||||||||| | ||| ||||| | | Sbjct 120178 GCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTGCTAATCGT 120237 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| |||||||||||||| |||||||| ||| ||| ||||||| || || | Sbjct 120238 CGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATG-TAGGCGCCACGGTCCG 120296 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | || ||||||| |||||||||||||||||| || || || Sbjct 120297 CCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGA 120356 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 || | || | || ||| | ||| | ||||| ||| |||| | ||| | Sbjct 120357 CCTGGTCCGGAATGGATT-TCACCTTCTGCACGGAGCCACCGTCAGCCA-GAATCTGGTT 120414 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| ||||||| | |||||||||| || |||| ||| | Sbjct 120415 GCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTACTTGTTCAC 120474 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || || | |||||| | ||| || ||| ||| ||| | || |||| Sbjct 120475 GATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTACGGCTCGAT 120534 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | ||| |||||||| ||||||||||| || || |||||||| ||||||| ||| || Sbjct 120535 GGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAG 120594 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA---T 204369 |||||||| | |||| || || | ||| || | | ||| || || Sbjct 120595 CGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATCCCACAAGCC 120654 Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429 || | || | |||||||||||||||||||| ||||| || | ||| | || || Sbjct 120655 CGAAGACGGGGTGACGCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGATCC 120714 Query 204430 CTTGTACGTC 204439 || | ||||| Sbjct 120715 CTGGAACGTC 120724 >seq2561 Length=604796 Score = 172 bits (190), Expect = 9e-38 Identities = 488/740 (66%), Gaps = 21/740 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 371561 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATCCAGTCGAACGGGTT 371502 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||||||| ||| ||| | || || | ||||| | ||| ||||| || || Sbjct 371501 CTTCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAGCAGGCGGTCGGCCACGAACTC 371442 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || || |||| || || | |||| |||||||||| || Sbjct 371441 GATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGCGAGTCGCT 371382 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||||||| | || || || ||| ||| ||| | || || | | Sbjct 371381 CACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATC-GCGTGCACGCGGCTCTCCG 371323 Query 159888 CCGGCTTGCCCA--AAATGTG-GTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| || || | | || ||| ||||||||| ||||| ||||| | Sbjct 371322 GCAGCTTGTTCACCAACTTCGAGT------ACATGAGGCACGCGAAGTCCGTGTGCATGC 371269 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 |||||||||| ||||| |||||| || | | | || || ||||||| || ||| | Sbjct 371268 CCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCT 371209 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| ||| ||| | | | | || || || ||||||||||| || ||| Sbjct 371208 TGAGCCAGAAGATGGA-GCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAAC 371150 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCA 160119 |||| || | ||| | || | | ||||| |||| ||| ||||| Sbjct 371149 GCCAGCAGACGCTCCGGGTAGGACG----AAACACGAGGGTCACACCACTTGAGCGCCCA 371094 Query 160120 TTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 |||||||| | | |||||| || ||||| ||| | ||| |||| ||| Sbjct 371093 GCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAAGTGATCCTTCTC 371034 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | | |||||||| || | |||||| |||||||| || | ||| | || || Sbjct 371033 CACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTC 370974 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 |||||| ||||| ||| |||||| | |||||| | |||||||| | |||| Sbjct 370973 GATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTGCACCTCATTGCTGAA 370914 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 | |||| || | || || | |||||| ||| || ||||| |||| |||||| Sbjct 370913 GTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAATGCCAGCACGTG 370854 Query 160360 AGAGATGAAATGTCTCTCGT 160379 |||||| || | ||||| Sbjct 370853 CTTGATGAAGTGGCGCTCGT 370834 >seq1300 Length=5041 Score = 172 bits (190), Expect = 9e-38 Identities = 488/740 (66%), Gaps = 21/740 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 1717 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATCCAGTCGAACGGGTT 1776 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||||||| ||| ||| | || || | ||||| | ||| ||||| || || Sbjct 1777 CTTCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAGCAGGCGGTCGGCCACGAACTC 1836 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || || |||| || || | |||| |||||||||| || Sbjct 1837 GATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGCGAGTCGCT 1896 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||||||| | || || || ||| ||| ||| | || || | | Sbjct 1897 CACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATC-GCGTGCACGCGGCTCTCCG 1955 Query 159888 CCGGCTTGCCCA--AAATGTG-GTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| || || | | || ||| ||||||||| ||||| ||||| | Sbjct 1956 GCAGCTTGTTCACCAACTTCGAGT------ACATGAGGCACGCGAAGTCCGTGTGCATGC 2009 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 |||||||||| ||||| |||||| || | | | || || ||||||| || ||| | Sbjct 2010 CCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCT 2069 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| ||| ||| | | | | || || || ||||||||||| || ||| Sbjct 2070 TGAGCCAGAAGATGG-AGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAAC 2128 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCA 160119 |||| || | ||| | || | | ||||| |||| ||| ||||| Sbjct 2129 GCCAGCAGACGCTCCGGGTAGGACG----AAACACGAGGGTCACACCACTTGAGCGCCCA 2184 Query 160120 TTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 |||||||| | | |||||| || ||||| ||| | ||| |||| ||| Sbjct 2185 GCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAAGTGATCCTTCTC 2244 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | | |||||||| || | |||||| |||||||| || | ||| | || || Sbjct 2245 CACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTC 2304 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 |||||| ||||| ||| |||||| | |||||| | |||||||| | |||| Sbjct 2305 GATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTGCACCTCATTGCTGAA 2364 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 | |||| || | || || | |||||| ||| || ||||| |||| |||||| Sbjct 2365 GTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAATGCCAGCACGTG 2424 Query 160360 AGAGATGAAATGTCTCTCGT 160379 |||||| || | ||||| Sbjct 2425 CTTGATGAAGTGGCGCTCGT 2444 >seq1932 Length=9237 Score = 165 bits (182), Expect = 1e-35 Identities = 485/738 (66%), Gaps = 21/738 (3%) Strand=Plus/Plus Query 159651 TCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCT 159710 ||||||| |||||||||||||||| || || || ||||| | |||| ||||||| Sbjct 1 TCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATCCAGTCGAACGGGTTCT 60 Query 159711 TCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGA 159770 |||||| ||| ||| | || || | ||||| | ||| ||||| || |||| Sbjct 61 TCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAGCAGGCGGTCGGCCACGAACTCGA 120 Query 159771 TGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACA 159830 |||| ||||| || || |||| || || | |||| |||||||||| || || Sbjct 121 TGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGCGAGTCGCTCA 180 Query 159831 GAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACCCC 159889 ||||| | ||||||| | || || || ||| ||| ||| | || || | | | Sbjct 181 CGAACTCGTGCTCAATCACCACAGCGTCACGCACGATC-GCGTGCACGCGGCTCTCCGGC 239 Query 159890 GGCTTGCCCA--AAATGTG-GTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 ||||| || || | | || ||| ||||||||| ||||| ||||| ||| Sbjct 240 AGCTTGTTCACCAACTTCGAGT------ACATGAGGCACGCGAAGTCCGTGTGCATGCCC 293 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 |||||||| ||||| |||||| || | | | || || ||||||| || ||| ||| Sbjct 294 TCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTG 353 Query 160007 AGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || |||| ||| ||| | | | | || || || ||||||||||| || ||||| Sbjct 354 AGCCAGAAGATGG-AGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGC 412 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCATT 160121 || || | ||| | || | | ||||| |||| ||| ||||| Sbjct 413 CAGCAGACGCTCCGGGTAGGACG----AAACACGAGGGTCACACCACTTGAGCGCCCAGC 468 Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 |||||||| | | |||||| || ||||| ||| | ||| |||| |||| Sbjct 469 GGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAAGTGATCCTTCTCCA 528 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | |||||||| || | |||||| |||||||| || | ||| | || |||| Sbjct 529 CGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGA 588 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| ||| |||||| | |||||| | |||||||| | |||| Sbjct 589 TGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTGCACCTCATTGCTGAAGT 648 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | |||| || | || || | |||||| ||| || ||||| || | |||||| Sbjct 649 TCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAATGCTAGCACGTGCT 708 Query 160362 AGATGAAATGTCTCTCGT 160379 |||||| || | ||||| Sbjct 709 TGATGAAGTGGCGCTCGT 726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795129596002560