Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2516 201 1e-46 seq2554 149 7e-31 seq2561 105 8e-18 seq1300 105 8e-18 seq1932 102 1e-16 >seq2516 Length=319815 Score = 201 bits (222), Expect = 1e-46 Identities = 733/1127 (65%), Gaps = 39/1127 (3%) Strand=Plus/Plus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 || ||||| ||||||| |||||||| || || | ||||| ||||| || |||||| Sbjct 120845 AGGATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTG 120904 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || || || || |||||||| ||||| ||| |||||| || | ||| Sbjct 120905 GACTTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGG 120964 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 ||||| ||| || | || | || || | ||| | |||| | |||| Sbjct 120965 GTCACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAACACTCCATCCTCC------ 121018 Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--G 110329 ||| | |||||||| || | |||||| || |||||||| | ||| || | || | Sbjct 121019 ACAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCG--GGCGACG 121076 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCTTCT 110386 |||| |||| ||| || ||||||||| || | | || || | ||||| || Sbjct 121077 TGTACTCCATAATCTCGCAGCACAAGTTGCTCGAGCGGATCGTG---CCGAGGTTCTGCT 121133 Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446 | ||||| ||| |||| || ||||| || |||||| | || || || || ||| Sbjct 121134 GGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCT 121193 Query 110447 GTGACTTGAGAATGGCCTTCCATACATCGGC--GGCGGGGACAGT--TGCGTTAGCGAGA 110502 | | | || ||||| ||| || | || ||| || || |||| ||| | Sbjct 121194 GCGCGTCCAGGATGGCGAACCA--CAGCTGCTGGGCATTGATCGTCTTGCGC--GCGCGC 121249 Query 110503 CCTTCCTCCTCGTACTTGGTGTACA-AGTCCTCAAATTCCTGTCCGTA-CACATCAGAAA 110560 || |||| ||||||||| ||||| |||| || || || | || | ||| || | | Sbjct 121250 CCCTCCTTCTCGTACTTCTCGTACAGAGTC-TCGAACTCGTCGCCCCAGCAC-TCGTAGA 121307 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || |||| | ||| ||||| ||| ||| || || | | || || | ||||| Sbjct 121308 GTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCA 121367 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCA 110679 ||||||| || || | ||||| || |||| ||||| || || | || || | | Sbjct 121368 TGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCT-CGTTG 121426 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| ||| ||||||| || || | | || | |||||| || || || ||| Sbjct 121427 CCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAG 121486 Query 110740 ACAGCGATGGATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG 110796 | |||| || || || || | || |||||| |||||||| || ||| ||||| Sbjct 121487 ATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTG 121546 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGAC 110856 |||||||| ||||| || || || || | |||| || || || || | || | Sbjct 121547 AAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTG 121606 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGT 110916 || |||| || |||| ||| ||| || |||||||| || |||||||| || Sbjct 121607 TTCGTGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCAC 121666 Query 110917 GCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGA 110976 || |||| |||| || | ||||| || |||||||| || ||| |||| | || Sbjct 121667 GCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGG 121726 Query 110977 AAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 || || || |||| ||| ||||| ||||| || || || ||||| || || ||||| || Sbjct 121727 AAACACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGC 121786 Query 111037 ATGAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC 111095 | || | || | || ||||| | || |||| ||||| | | | |||| Sbjct 121787 GTAAAGA-ACATCTGTGACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTT 121845 Query 111096 GTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATC 111155 ||||||||| | || || ||||||| ||| | || || || | | |||||| | Sbjct 121846 GTGAATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTTCCGT- 121904 Query 111156 AACACGCTGA--AGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 ||||| || ||||| | | ||| || ||||||| || ||||| Sbjct 121905 -TCACGCGGAAGAGGTAGCCCCGCTCGAGCGTCTTGAAGCCGAAGTA 121950 >seq2554 Length=570991 Score = 149 bits (164), Expect = 7e-31 Identities = 326/482 (68%), Gaps = 15/482 (3%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | |||||||||||| | ||||| Sbjct 53562 ATCTGCCGGTCGAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCGGCGCGGTTC 53503 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| ||||| || || Sbjct 53502 GTACCAGCAAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCCACCAGC 53446 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 |||||||||| ||| | ||||||||| || ||| | | | | |||| ||||| Sbjct 53445 AGCTGGTTGAGCGTGTTTTCACGCTCGTCATTGCCGC-CGGAGAAGTTGCCCTT-GCTTC 53388 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||| ||||| ||||||||||| || || || || ||| || || | Sbjct 53387 GTGCACGGGCCACAGCATCAATTTCATCGATGAACACAATGCATGGAGCGTTCGCGCGAG 53328 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || |||||||||||| | || ||||| |||||||| || | ||||| Sbjct 53327 CCTCCTTGAACAGGTCACGTACACGCGAGGGACCCACACCAACGAACATTTCGATGAAGT 53268 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 || |||| | ||||| ||| || || | | ||| ||||| |||| || || Sbjct 53267 CTGAACCAGAGATGCTGAA-GAACGGCACGCTGGCCTCGCCAGCCGTGGCCTTCGCCAGC 53209 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 | || || |||||||| || | ||| |||| || ||||| ||||||||| || ||| Sbjct 53208 AACGTTTTGCCCGTACCGGGCGGGCCAACGAGCAGCGCGCCCTTGGGGATCTTCGCTCCA 53149 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || ||||||||||| | |||| | ||||| ||| Sbjct 53148 AGCTCCGTGAAGCGCTTTTGGTTGCGAAGGAAGTCCACGAACTCCATGATTTCCTTCTTT 53089 Query 11968 GC 11969 || Sbjct 53088 GC 53087 >seq2561 Length=604796 Score = 105 bits (116), Expect = 8e-18 Identities = 349/529 (66%), Gaps = 19/529 (4%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| |||||||| || ||||| || | || ||||| | ||||| Sbjct 371575 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 371516 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTG-ACCAACTTGTTTCAGAAGACG 119326 |||| || || || || ||| |||| ||| || ||| | | | ||| || || Sbjct 371515 CAGTCGAACGGGTTCTTCACGTTGTAGATCT-TGGATGCACCCAGTGAGTACAGCAGGCG 371457 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| || ||||||| || | | |||| | || ||||| || || || | || Sbjct 371456 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTC-CA 371398 Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 |||| || | ||| | ||| | | ||| ||| ||||||| || |||||| | || Sbjct 371397 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 371338 Query 119446 GAATA-GTTTCTGTCGATGGTTTGTTTCTCAA----GAGTTTAAACAACTCTACGGCAAA 119500 | | | ||| || | ||||| ||| |||| | | | | ||| || Sbjct 371337 GCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGT--ACATGAGGC-ACGCGAAG 371282 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 | | || | ||||| | ||||| ||||||||| || ||||| || |||||||| Sbjct 371281 TCCGTGTGCATGCCCT-CGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 371223 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 ||| || | ||||| ||||| ||||||| || || || || ||||| |||||||| Sbjct 371222 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 371163 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACT 119676 ||| |||||| || | |||||||| | ||| ||| || ||| |||||| Sbjct 371162 CACGGCGGCGAACGCCAGCAGACGCTCCG-GGTAGGACGAAACACGAGGGTCACACCACT 371104 Query 119677 TGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 |||| |||||| |||||| ||| | ||| |||| || | |||||| Sbjct 371103 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 371055 >seq1300 Length=5041 Score = 105 bits (116), Expect = 8e-18 Identities = 349/529 (66%), Gaps = 19/529 (4%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| |||||||| || ||||| || | || ||||| | ||||| Sbjct 1703 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1762 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTG-ACCAACTTGTTTCAGAAGACG 119326 |||| || || || || ||| |||| ||| || ||| | | | ||| || || Sbjct 1763 CAGTCGAACGGGTTCTTCACGTTGTAGATCT-TGGATGCACCCAGTGAGTACAGCAGGCG 1821 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| || ||||||| || | | |||| | || ||||| || || || | || Sbjct 1822 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTC-CA 1880 Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 |||| || | ||| | ||| | | ||| ||| ||||||| || |||||| | || Sbjct 1881 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1940 Query 119446 GAATA-GTTTCTGTCGATGGTTTGTTTCTCAA----GAGTTTAAACAACTCTACGGCAAA 119500 | | | ||| || | ||||| ||| |||| | | | | ||| || Sbjct 1941 GCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGT--ACATGAGGC-ACGCGAAG 1996 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 | | || | ||||| | ||||| ||||||||| || ||||| || |||||||| Sbjct 1997 TCCGTGTGCATGCCCT-CGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 2055 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 ||| || | ||||| ||||| ||||||| || || || || ||||| |||||||| Sbjct 2056 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 2115 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACT 119676 ||| |||||| || | |||||||| | ||| ||| || ||| |||||| Sbjct 2116 CACGGCGGCGAACGCCAGCAGACGCTCCG-GGTAGGACGAAACACGAGGGTCACACCACT 2174 Query 119677 TGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 |||| |||||| |||||| ||| | ||| |||| || | |||||| Sbjct 2175 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 2223 >seq1932 Length=9237 Score = 102 bits (112), Expect = 1e-16 Identities = 153/216 (71%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || ||||| ||||||||| || ||||| || ||||||||||| || | ||| Sbjct 291 CCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTC 350 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || ||||| ||||||||||| |||||| Sbjct 351 TTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAAC 410 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACTTGAGAGCCCAGTT 119689 || | |||||||| | ||| ||| || ||| |||||||||| |||||| Sbjct 411 GCCAGCAGACGCTCCG-GGTAGGACGAAACACGAGGGTCACACCACTTGAGCGCCCAGCG 469 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 |||||| ||| | ||| |||| || | |||||| Sbjct 470 GGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588957034972800