Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2516 172 6e-38 seq2561 122 1e-22 seq1300 122 1e-22 seq1932 111 2e-19 seq2574 86.0 7e-12 seq2422 86.0 7e-12 >seq2516 Length=319815 Score = 172 bits (190), Expect = 6e-38 Identities = 736/1144 (64%), Gaps = 43/1144 (4%) Strand=Plus/Plus Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330 |||||| ||||||||||||| || || || | ||||| || | ||| ||||| || ||| Sbjct 120848 ATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGAC 120907 Query 106331 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 106390 || ||||| ||| ||||| || | || ||||||||| ||| | || ||| Sbjct 120908 TTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTC 120967 Query 106391 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 106450 || | ||| || | || | || || | || | || | || | || | ||| Sbjct 120968 ACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACA 121021 Query 106451 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 106510 |||| || ||||| | || |||| ||||| || ||| |||||| |||||| Sbjct 121022 AACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTAC 121081 Query 106511 TCTAAAATTTCTGTACACAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTA 106567 || | ||| || ||||||||| ||| ||||| || | |||| ||||| Sbjct 121082 TCCATAATCTCGCAGCACAAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTC 121138 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||| |||| ||| |||||||| |||||| | ||| |||||||| |||| | Sbjct 121139 GACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCG 121198 Query 106628 TTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCC 106681 | || || || ||||| || ||||| || || ||| || || || ||| Sbjct 121199 TCCAGGATGGCGAACCACA-----GCTGCTGGG-CATTGATCGTCTTGCGCGCGCGCCCC 121252 Query 106682 TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACC 106740 ||| ||||||||| ||| || | || ||||| || ||| | || ||| |||| || Sbjct 121253 TCCTTCTCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCC 121311 Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800 || |||| | || |||||||| ||| | || | | || || ||||||||||| Sbjct 121312 GGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAA 121371 Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTT 106859 || || || | |||||| | | ||||| || | | | | || | |||| || | Sbjct 121372 CAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGT 121430 Query 106860 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 106919 |||| || | ||| |||||||| | | || |||||||| ||||| || |||| | Sbjct 121431 GGTTCTTGCGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGG 121490 Query 106920 CGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 106976 ||| || || || || | || | || | |||||||| || ||| | || || | Sbjct 121491 CGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGA 121550 Query 106977 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTA 107035 | | ||||| || || || || | ||| || || || || || || || | || Sbjct 121551 CCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTC 121609 Query 107036 TTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCA 107095 |||| | | | || || || |||||||| || |||||||| ||||| ||| Sbjct 121610 GTGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCG 121669 Query 107096 CACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAG 107155 |||| | | || || | || || || | || ||||| |||| |||| | ||||| Sbjct 121670 CACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAA 121729 Query 107156 CAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---A 107212 || |||| |||||| | || || || || || ||||| || || || ||||| | Sbjct 121730 CACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTA 121789 Query 107213 ATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272 | |||||| || ||||| || || || | || | | | ||||||| | | Sbjct 121790 AAGAACAT---CTGTGACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTG 121846 Query 107273 TGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCG 107332 || || || | ||||| ||||| | ||| | ||||| |||| || | || | Sbjct 121847 TGAATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTTCCGTTC 121906 Query 107333 AGCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGT 107390 | || ||||| |||| | ||| || || |||| || ||||| | | ||| ||| Sbjct 121907 A--CGCGGAAGAGGTAGCCCCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGT 121964 Query 107391 CCCG 107394 |||| Sbjct 121965 CCCG 121968 >seq2561 Length=604796 Score = 122 bits (134), Expect = 1e-22 Identities = 350/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 371575 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 371516 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||| || || |||||| |||| | || || |||||| | | | || || | Sbjct 371515 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGC 371458 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 | || | ||| |||| ||||||| | |||| | |||||||||| ||||| || | Sbjct 371457 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 371398 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | ||| | |||| | | ||||||| | || || || |||||| |||| Sbjct 371397 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 371338 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 117278 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 371337 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 371283 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 ||| ||| | ||||| || ||| || || || || ||||||| || || ||||| Sbjct 371282 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 371223 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||| || |||||||| | ||| | || | |||||| || || |||||||| || ||||| Sbjct 371222 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 371163 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATT 117457 ||| || ||||| | || ||||| | | |||| ||| || | |||| |||| | Sbjct 371162 CACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACT 371104 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 371103 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 371055 >seq1300 Length=5041 Score = 122 bits (134), Expect = 1e-22 Identities = 350/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 1703 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1762 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||| || || |||||| |||| | || || |||||| | | | || || | Sbjct 1763 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGC 1820 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 | || | ||| |||| ||||||| | |||| | |||||||||| ||||| || | Sbjct 1821 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 1880 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | ||| | |||| | | ||||||| | || || || |||||| |||| Sbjct 1881 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1940 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 117278 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 1941 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 1995 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 ||| ||| | ||||| || ||| || || || || ||||||| || || ||||| Sbjct 1996 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 2055 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||| || |||||||| | ||| | || | |||||| || || |||||||| || ||||| Sbjct 2056 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 2115 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATT 117457 ||| || ||||| | || ||||| | | |||| ||| || | |||| |||| | Sbjct 2116 CACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACT 2174 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 2175 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 2223 >seq1932 Length=9237 Score = 111 bits (122), Expect = 2e-19 Identities = 338/513 (66%), Gaps = 16/513 (3%) Strand=Plus/Plus Query 117002 TCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATTCT 117061 |||| |||||||||||||| || | || || | ||||| |||| || || |||| Sbjct 1 TCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATCCAGTCGAACGGGTTCT 60 Query 117062 TCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACATACTC 117119 || |||| | || || |||||| | | | || || || || | ||| |||| Sbjct 61 TCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGCGGTCGGCCACGAACTC 118 Query 117120 AATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCGTCCAA 117179 ||||||| | |||| | |||||||||| ||||| || | ||||| | ||| Sbjct 119 GATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGCGAGTCGCT 178 Query 117180 GATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGT----TTCGG 117235 | |||| | | ||||||| | || || || |||||| ||||| | | ||| Sbjct 179 CACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTGCACGCGGCTCTCCGG 238 Query 117236 TAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCTGGTGGAGACCC 117294 || || | || ||| || | | | | |||| | || ||| ||| | ||| Sbjct 239 CAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAAGTCCGTGTGCATGCCC 293 Query 117295 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTC 117354 || || ||| || || || || ||||||| || || |||||||| || |||||||| Sbjct 294 TCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTG 353 Query 117355 AACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCA 117414 | ||| | || | |||||| || || |||||||| || |||||||| || ||||| Sbjct 354 AGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGCC 413 Query 117415 AAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATTTCATTGCCCATTTCGC 117473 | || ||||| | | |||| ||| || | |||| |||| || | ||||| || Sbjct 414 AGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACTTGAGCGCCCAGCGGGC 472 Query 117474 CTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||||||||| | || || | || | |||||| Sbjct 473 CTTCTTCTCCACGCACGGGATCGTCTCGATGGC 505 >seq2574 Length=946144 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 945300 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 945359 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 945360 CCGGTAGGAGCT 945371 >seq2422 Length=58139 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 57301 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 57242 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 57241 CCGGTAGGAGCT 57230 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 58083 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 58024 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 58023 CCGGTAGGAGCT 58012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589961802618240