Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2561 122 1e-22 seq1300 122 1e-22 seq1932 111 2e-19 seq2559 89.7 6e-13 >seq2561 Length=604796 Score = 122 bits (134), Expect = 1e-22 Identities = 350/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | ||||||||||| ||||| | || |||| |||| Sbjct 371055 GCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGAC 371114 Query 65056 AC-AAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | ||||| || | ||||| || |||||||| || || Sbjct 371115 CCTCGTGTTTCG-TCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTT 371173 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| || |||||||| || || Sbjct 371174 CTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCT 371233 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||||||| || || || || ||| || ||||| | ||| ||| || | |||| Sbjct 371234 GAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCC 371292 Query 65235 GC-TCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTG 65289 | | | | || ||| || | || || ||| | | ||||| |||||| Sbjct 371293 TCATGTACTCGAAGTTG-GTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTG 371348 Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 || || || | ||||||| | | |||| | ||| | ||||| | || ||| Sbjct 371349 CGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATC 371408 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||||| | |||| | ||||||| |||| ||| | || || || || | Sbjct 371409 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTAC 371468 Query 65410 CAAGTTGGGGTGCCACC--CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 | | |||||| || || | |||| |||||| || || |||| ||||| | | Sbjct 371469 TCACT--GGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 371526 Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | || | || |||||||||||||| |||||||| || || || || Sbjct 371527 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 371575 >seq1300 Length=5041 Score = 122 bits (134), Expect = 1e-22 Identities = 350/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | ||||||||||| ||||| | || |||| |||| Sbjct 2223 GCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGAC 2164 Query 65056 AC-AAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | ||||| || | ||||| || |||||||| || || Sbjct 2163 CCTCGTGTTTCG-TCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTT 2105 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| || |||||||| || || Sbjct 2104 CTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCT 2045 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||||||| || || || || ||| || ||||| | ||| ||| || | |||| Sbjct 2044 GAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCC 1986 Query 65235 GC-TCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTG 65289 | | | | || ||| || | || || ||| | | ||||| |||||| Sbjct 1985 TCATGTACTCGAAGTTG-GTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTG 1930 Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 || || || | ||||||| | | |||| | ||| | ||||| | || ||| Sbjct 1929 CGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATC 1870 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||||| | |||| | ||||||| |||| ||| | || || || || | Sbjct 1869 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTAC 1810 Query 65410 CAAGTTGGGGTGCCACC--CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 | | |||||| || || | |||| |||||| || || |||| ||||| | | Sbjct 1809 TCACT--GGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 1752 Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | || | || |||||||||||||| |||||||| || || || || Sbjct 1751 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1703 >seq1932 Length=9237 Score = 111 bits (122), Expect = 2e-19 Identities = 338/513 (66%), Gaps = 16/513 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | ||||||||||| ||||| | || |||| |||| Sbjct 505 GCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGAC 446 Query 65056 AC-AAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | ||||| || | ||||| || |||||||| || || Sbjct 445 CCTCGTGTTTCG-TCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTT 387 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| || |||||||| || || Sbjct 386 CTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCT 327 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||||||| || || || || ||| || ||||| | ||| ||| || | |||| Sbjct 326 GAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCC 268 Query 65235 GC-TCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTG 65289 | | | | || ||| || | || || ||| | | ||||| |||||| Sbjct 267 TCATGTACTCGAAGTTG-GTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTG 212 Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 || || || | ||||||| | | |||| | ||| | ||||| | || ||| Sbjct 211 CGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATC 152 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||||| | |||| | ||||||| |||| ||| | || || || || | Sbjct 151 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTAC 92 Query 65410 CAAGTTGGGGTGCCACC--CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 | | |||||| || || | |||| |||||| || || |||| ||||| | | Sbjct 91 TCACT--GGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 34 Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 | || | || |||||||||||||| |||| Sbjct 33 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGA 1 >seq2559 Length=596890 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664 |||| | || ||| | || ||||||||||| || || | || || || || ||||| Sbjct 103932 AGTGCTCGCTGATTTTGACTGAGGGTGATTCTGCCAAGGCACTGGCCGTGGCTGGTCTGG 103873 Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTC 13724 | || ||||| |||||||| ||||||||||| || |||||||| ||| | ||| || | Sbjct 103872 CAGTGGTTGGACGTGATCAGTACGGTGTGTTTCCTCTTCGCGGCAAACTTCTGAACGTGC 103813 Query 13725 GGGACGCTTCGGTGGCACAGCT 13746 | || || | ||||| ||||| Sbjct 103812 GTGATGCGACCGTGGCGCAGCT 103791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550390458880