Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_022981.1 Length=76323 Score E Sequences producing significant alignments: (Bits) Value seq2560 143 1e-29 >seq2560 Length=600116 Score = 143 bits (158), Expect = 1e-29 Identities = 331/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 66497 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66556 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 91034 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 91093 Query 66557 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66616 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 91094 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 91153 Query 66617 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66676 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 91154 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 91213 Query 66677 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66736 ||||| |||||||| || || || || || ||| || | | ||||| ||||| | Sbjct 91214 CCGCGTGCCGAGCTTGAGGGGGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATTA 91273 Query 66737 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 66793 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 91274 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 91331 Query 66794 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 66853 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 91332 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 91387 Query 66854 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66913 || |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 91388 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 91447 Query 66914 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 66973 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 91448 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 91507 Query 66974 AACAAGCTGGCCCCGCC 66990 ||||||||||| |||| Sbjct 91508 AACAAGCTGGCGTCGCC 91524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244101136204224