Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2569 93.3 1e-13 >seq2569 Length=732260 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || || ||||| |||| ||||| ||| ||| | |||| Sbjct 55522 AAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGACTCCATCGACAAC 55581 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 55582 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTGATCTTC 55641 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 55642 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 55701 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | || || | ||||| Sbjct 55702 ACGCTGCACTTGGTGCTGCGTCTTCG 55727 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || || ||||| |||| ||||| ||| ||| | |||| Sbjct 55066 AAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGACTCCATCGACAAC 55125 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 55126 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTGATCTTC 55185 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 55186 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 55245 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 55246 ACGCTGCAC 55254 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || || ||||| |||| ||||| ||| ||| | |||| Sbjct 55294 AAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGACTCCATCGACAAC 55353 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 55354 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTGATCTTC 55413 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 55414 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 55473 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 55474 ACGCTGCAC 55482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181781794004496