Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2561 116 5e-21 seq1300 116 5e-21 seq1932 105 8e-18 seq2559 91.5 2e-13 seq2574 86.0 8e-12 seq2422 86.0 8e-12 >seq2561 Length=604796 Score = 116 bits (128), Expect = 5e-21 Identities = 349/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 371575 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 371516 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||| || || |||||| |||| | || || |||||| | | | || || | Sbjct 371515 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGC 371458 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | ||| |||| ||||||| | |||| | |||||||||| ||||| || | Sbjct 371457 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 371398 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | ||| | |||| | | ||||||| | || || || |||||| |||| Sbjct 371397 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 371338 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 122663 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 371337 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 371283 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 ||| ||| | ||||| || ||| || || || || ||||||| ||||| ||||| Sbjct 371282 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 371223 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || |||||||| | ||| | || | |||||| || || |||||||| || ||||| Sbjct 371222 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 371163 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATT 122842 ||| || ||||| | || || || | | |||| ||| || | ||| |||| | Sbjct 371162 CACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACT 371104 Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 371103 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 371055 >seq1300 Length=5041 Score = 116 bits (128), Expect = 5e-21 Identities = 349/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 1703 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1762 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||| || || |||||| |||| | || || |||||| | | | || || | Sbjct 1763 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGC 1820 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | ||| |||| ||||||| | |||| | |||||||||| ||||| || | Sbjct 1821 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 1880 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | ||| | |||| | | ||||||| | || || || |||||| |||| Sbjct 1881 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1940 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 122663 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 1941 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 1995 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 ||| ||| | ||||| || ||| || || || || ||||||| ||||| ||||| Sbjct 1996 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 2055 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || |||||||| | ||| | || | |||||| || || |||||||| || ||||| Sbjct 2056 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 2115 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATT 122842 ||| || ||||| | || || || | | |||| ||| || | ||| |||| | Sbjct 2116 CACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACT 2174 Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 2175 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 2223 >seq1932 Length=9237 Score = 105 bits (116), Expect = 8e-18 Identities = 337/513 (66%), Gaps = 16/513 (3%) Strand=Plus/Plus Query 122387 TCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATTCT 122446 |||| |||||||||||||| || | || || | ||||| |||| || || |||| Sbjct 1 TCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATCCAGTCGAACGGGTTCT 60 Query 122447 TCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACATACTC 122504 || |||| | || || |||||| | | | || || || || | ||| |||| Sbjct 61 TCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGCGGTCGGCCACGAACTC 118 Query 122505 AATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTGCGTCCAA 122564 ||||||| | |||| | |||||||||| ||||| || | ||||| | ||| Sbjct 119 GATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGCGAGTCGCT 178 Query 122565 GATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGT----TTCGG 122620 | |||| | | ||||||| | || || || |||||| ||||| | | ||| Sbjct 179 CACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTGCACGCGGCTCTCCGG 238 Query 122621 TAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCTGGTGGAGACCC 122679 || || | || ||| || | | | | |||| | || ||| ||| | ||| Sbjct 239 CAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAAGTCCGTGTGCATGCCC 293 Query 122680 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTC 122739 || || ||| || || || || ||||||| ||||| |||||||| || |||||||| Sbjct 294 TCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTG 353 Query 122740 AACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCA 122799 | ||| | || | |||||| || || |||||||| || |||||||| || ||||| Sbjct 354 AGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGCC 413 Query 122800 AAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATTTCATTGCCCATTTCGC 122858 | || || || | | |||| ||| || | ||| |||| || | ||||| || Sbjct 414 AGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACTTGAGCGCCCAGCGGGC 472 Query 122859 CTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||||||||| | || || | || | |||||| Sbjct 473 CTTCTTCTCCACGCACGGGATCGTCTCGATGGC 505 >seq2559 Length=596890 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 182660 AAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACC 182719 |||||| ||||| | || || || || ||| | ||| |||||||| || |||||||| Sbjct 103790 AAGCTGCGCCACGGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACC 103849 Query 182720 GTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACC 182779 ||| |||||||| ||||| || | ||||| || || || || | || || |||||||| Sbjct 103850 GTACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACC 103909 Query 182780 CTCCGTGACAATGAGAGTACACT 182802 ||| || | ||| || | |||| Sbjct 103910 CTCAGTCAAAATCAGCGAGCACT 103932 >seq2574 Length=946144 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 945300 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 945359 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 945360 CCGGTAGGAGCT 945371 >seq2422 Length=58139 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 57301 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 57242 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 57241 CCGGTAGGAGCT 57230 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 58083 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 58024 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 58023 CCGGTAGGAGCT 58012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628011777369600