Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2516 251 9e-62 seq2561 183 4e-41 seq1300 183 4e-41 seq2559 98.7 1e-15 >seq2516 Length=319815 Score = 251 bits (278), Expect = 9e-62 Identities = 1122/1754 (64%), Gaps = 76/1754 (4%) Strand=Plus/Plus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | || ||| Sbjct 120169 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTT 120228 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | || || | ||| | ||||| ||| || ||| || || Sbjct 120229 GCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCC 120288 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || ||||||| || || | ||| ||||| |||||| |||||||| ||| |||| Sbjct 120289 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 120348 Query 118022 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATGGATCCACCCGCCTTGAC 118078 | ||| | | || || || | ||| || || | ||| ||||| | | Sbjct 120349 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAG 120405 Query 118079 CATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 118138 || | | || || | ||||| || | || | || |||| || ||| | Sbjct 120406 AATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTA 120465 Query 118139 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 118198 ||| || || | |||||||| || || ||| | || || || | |||||| Sbjct 120466 CTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTA 120525 Query 118199 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 118258 ||||| | | |||||||||| ||||| || || || || || || |||||||| || || Sbjct 120526 CGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGC 120585 Query 118259 CATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTC 118318 || ||| || ||| |||| || | | | | | |||||||| || |||| || Sbjct 120586 CACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATC 120645 Query 118319 GTAGTTG-----AG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 118372 | | || | || | ||| ||||| || ||||||| |||||| | | Sbjct 120646 CCACAAGCCCGAAGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATACCCTTGCT 120702 Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 118432 || |||||||||| || ||||| || |||||| | |||| | || | || | Sbjct 120703 GGCAGGCGATCCCTGGAACGTCTCGTACGGGCCC---AGCTCC------TTGGCGATCTC 120753 Query 118433 C-TCGAGGGCT--------GCGTGATACATTGTTTCAAAAATGCGAGCATTCAT--TGCC 118481 | |||||| || |||| || || ||||| || ||| ||||| || Sbjct 120754 CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTTTCGAAGATG------TTCATGTTGAG 120807 Query 118482 TT---GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGA 118535 || || || | || || ||||| ||| || | |||||| ||||||||||| Sbjct 120808 TTCACGGGCTTGCGGGCTCTCGAACGCATAGTT--CATGAGGATAAATGCATCCGCGAGA 120865 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG 118595 || ||||| || | |||| ||||| || | ||| || ||||| || || ||||||| Sbjct 120866 CCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACG 120925 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || || | || || || ||| | || | || ||| || ||||| || | || Sbjct 120926 GGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCG 120985 Query 118656 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 | ||||| | ||| | || | || | || | ||| |||| || ||||| | Sbjct 120986 TACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACA 121039 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 |||||||| || ||||| | |||||| |||||||| ||||| || |||| Sbjct 121040 GACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCAC 121099 Query 118776 AAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 ||||| ||| || ||||| | ||||| || || ||||| ||| ||| Sbjct 121100 AAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCG 121156 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||| | ||| |||||||| | || | | || || || ||| Sbjct 121157 TCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA- 121215 Query 118893 ACATCGGCAGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 || | || | |||| | | | ||| || |||||||| | ||||||||| ||| Sbjct 121216 -CAGCTGCTG--GGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTA 121272 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 || | || ||||| || ||| | ||| |||| || || |||| || |||||||| Sbjct 121273 CAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAA 121332 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 || ||| | || | | || || ||||||||||| || || |||| ||| || || Sbjct 121333 AAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGC 121392 Query 119069 CGAGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 ||||||| || || || | || | || | || || || |||| ||||| | Sbjct 121393 GTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGCTCCAGGA 121451 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 119184 | || | | || ||||||||||| |||||||| | |||| || || || || | Sbjct 121452 ACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGC 121511 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 || |||||| ||||| | || ||| | || || || | ||||| || ||||| | Sbjct 121512 CTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCC 121571 Query 119245 CATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGT 119304 | | |||| || || || || || || || |||| | || | ||| || Sbjct 121572 CGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATAC 121631 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 || |||||||| || |||||||| ||||| |||||||| | |||| || |||| | Sbjct 121632 TAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAA 121691 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGG 119424 | || || |||||||| ||| | || | ||||| || ||||| || || | | Sbjct 121692 TGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCG 121751 Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTG 119483 | || || ||||| ||||| || || |||||||| | || | || | || ||||| Sbjct 121752 GCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGC 121810 Query 119484 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 119543 || || || | || | || | ||||||| | ||||||||| | || || ||||| Sbjct 121811 TCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATG 121870 Query 119544 AACATGTATTGGGG 119557 | ||| | ||||| Sbjct 121871 ATCATCTGCTGGGG 121884 >seq2561 Length=604796 Score = 183 bits (202), Expect = 4e-41 Identities = 363/526 (69%), Gaps = 10/526 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 371575 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 371516 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || || |||||||| ||| | | ||| |||| ||| | | | || || | Sbjct 371515 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCAC-CCAGTGAG-TACAGCAGGC 371458 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| |||| ||||||| |||| | | |||||||| ||||| || | Sbjct 371457 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 371398 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||| ||| | |||| | | |||||| ||||||| || |||||||| |||| Sbjct 371397 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 371338 Query 129966 GAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTC 130023 | | | | ||| | ||| | | || ||| || | | | | ||| || || || Sbjct 371337 GCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGGCAC-GCGAAGTC 371280 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 | ||| | |||||||| ||| |||||| || |||||||||| |||||| |||||||| Sbjct 371279 CGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 371220 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || | || || || || |||||||| || |||||||| Sbjct 371219 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCAC 371160 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCA 130202 |||||||| | |||||||| | |||| || || | ||| ||||||| | Sbjct 371159 GGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACTTGA 371101 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 371100 GCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 371055 >seq1300 Length=5041 Score = 183 bits (202), Expect = 4e-41 Identities = 363/526 (69%), Gaps = 10/526 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 1703 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1762 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || || |||||||| ||| | | ||| |||| ||| | | | || || | Sbjct 1763 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCAC-CCAGTGAG-TACAGCAGGC 1820 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| |||| ||||||| |||| | | |||||||| ||||| || | Sbjct 1821 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 1880 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||| ||| | |||| | | |||||| ||||||| || |||||||| |||| Sbjct 1881 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1940 Query 129966 GAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTC 130023 | | | | ||| | ||| | | || ||| || | | | | ||| || || || Sbjct 1941 GCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGGCAC-GCGAAGTC 1998 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 | ||| | |||||||| ||| |||||| || |||||||||| |||||| |||||||| Sbjct 1999 CGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 2058 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || | || || || || |||||||| || |||||||| Sbjct 2059 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCAC 2118 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCA 130202 |||||||| | |||||||| | |||| || || | ||| ||||||| | Sbjct 2119 GGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACTTGA 2177 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 2178 GCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 2223 >seq2559 Length=596890 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 179920 AGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 179979 || |||||||| | ||||| || || || | || || || ||||| ||||||||| Sbjct 103791 AGCTGCGCCACGGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 103850 Query 179980 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 180039 || |||||||| |||||||| | |||||||| || || || | ||| || ||||||||| Sbjct 103851 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 103910 Query 180040 TCCGTCACGATGAGCGTACACT 180061 || |||| || |||| |||| Sbjct 103911 TCAGTCAAAATCAGCGAGCACT 103932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415286386560