Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2561 109 6e-19 seq1932 109 6e-19 seq1300 109 6e-19 seq2505 84.2 3e-11 >seq2561 Length=604796 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 371160 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 371219 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 371220 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 371269 >seq1932 Length=9237 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 400 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 341 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 340 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 291 >seq1300 Length=5041 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 2118 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 2059 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 2058 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 2009 >seq2505 Length=270552 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 9761 || || ||||| || ||||||| |||||| || | || ||| | ||||| | || | Sbjct 25451 GCGTCGATCTCGTCGATGAAGATGATGCACGGA-GCCTTCCGCTTGGCCGACT-CGAACA 25508 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || || || || ||||||||||| ||| |||||||| | || | | | | || Sbjct 25509 GGTCGCGCACGCGGCGCGCGCCCACACCTACATACATCTCCTCGAACTCGGAGCCCGACG 25568 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || |||||| ||| | || || |||||||| ||||| ||||| ||||| |||| Sbjct 25569 AGTAGAAGAAGGGCACACCGGCCTCGCCGGCAATGGCACGGGCCAGAAGCGTCTTGCCCG 25628 Query 9882 TACCTGG 9888 | ||||| Sbjct 25629 TGCCTGG 25635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242019002240