Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2516 522 3e-143 seq2561 228 9e-55 seq1300 228 9e-55 seq1932 208 8e-49 seq2517 87.8 2e-12 >seq2516 Length=319815 Score = 522 bits (578), Expect = 3e-143 Identities = 1131/1669 (68%), Gaps = 40/1669 (2%) Strand=Plus/Minus Query 19169 ACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCC 19228 || || || || ||| |||| |||||| |||||||||||||| || || || |||||| Sbjct 121818 ACGTATGAGCTCATGTCACAGATGTTCTTTACGCACGCGACGCCCACGCTCTTTAACGCC 121759 Query 19229 GGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATT 19288 || ||| |||||| ||||| |||||||| |||| ||| |||| ||| ||| Sbjct 121758 GGCACGCCGCGTCCGCAGCTGTCGTCGTGTTTCCTGCTGGCCATGCAGGACGACTCGATT 121699 Query 19289 GAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATC 19348 |||||||| ||||| ||||||||| |||||||| ||||||||||||| |||| ||||| Sbjct 121698 GAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGGAGGTATT 121639 Query 19349 GGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACA-CGA-ATCAATGGGACGAACGGA 19405 || || ||| | || ||||| | | | ||| | | ||| || ||||||||| Sbjct 121638 GGCATTAGTATGCAC-AACATCCGCGCCAC--GAACAGCTACATCCGCGGCACGAACGGA 121582 Query 19406 GTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAAC 19465 | || |||| ||| |||| ||||| | |||||||| |||||||| | || || || Sbjct 121581 TCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAATGACACGGCCCGCTATGTGGAC 121522 Query 19466 CAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 ||||| || ||||| ||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct 121521 CAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGAC 121462 Query 19526 GTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGAC 19585 || | || ||||| || |||||| |||||| || ||||| | ||| |||||| Sbjct 121461 GTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAACGAGCTGCACCGCGCGCGCGAC 121402 Query 19586 CTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAA 19645 |||||| || ||||| | || || || |||||| || || || | ||| | Sbjct 121401 CTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCGAACGGCAAG 121342 Query 19646 TGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTC 19705 ||| ||| | ||||| | || ||| || || ||| || ||||| | |||| Sbjct 121341 TGGAGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTACGAGTGCTGGGGCGACGAGTTC 121282 Query 19706 AATGAGT-TGTACCGGACTTACGTAGCCCAGGGCCG---GTTCAAGAAGGTGGTCCGGGC 19761 | || | ||||| || |||| |||| || | ||||| | || || Sbjct 121281 GA-GACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCGCGCGCAAGA---CGATCAATGC 121226 Query 19762 CCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTG 19821 || | | | ||| | | |||| | ||| | ||||| ||| |||| |||| Sbjct 121225 CCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGACGGGCGTGCCGTTCATGCT 121166 Query 19822 CTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTC 19881 ||||||||||| || ||| |||||| || ||| ||||| ||||| ||||| ||| Sbjct 121165 GTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCTCGAG 121106 Query 19882 CAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCT 19941 |||| |||| || || |||||| | ||| || ||| || ||||| || || Sbjct 121105 CAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCGATGAGGTGGCGGTGTGCAACCT 121046 Query 19942 GGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTA 20001 |||||| || ||| || | || || ||| ||| ||| || |||| Sbjct 121045 GGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGGATGGAGTGTTCAACTACCAGAAGCTGTA 120986 Query 20002 CGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC 20061 |||||||||| ||| || || || || |||| ||||| || |||| ||||| Sbjct 120985 CGAGGTGACCAAGGTGGTGACCCGGAACTTGAACAAGGTCATTGACGTCAACTACTACCC 120926 Query 20062 GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGG 20121 |||| |||||||||||| || ||||||||||| ||| | | || ||||||||||| Sbjct 120925 CGTGGAGGAGGCGCGCAAGTCCAACATGCGCCACCGCCCGGTTGGTATTGGCGTCCAGGG 120866 Query 20122 CCTGGCCGACGTTTTCATGATGCTCGGCCTCT-CATTCGACGATCCC-AAGGCGCGCGAG 20179 || || || | || || | | | || | | ||||| || ||| | || || || Sbjct 120865 TCTCGCGGATGCATTTATCCT-CATGAACTATGCGTTCGA-GAGCCCGCAAGCCCGTGAA 120808 Query 20180 CTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTC 20239 ||||||| | ||||||||| | | ||| |||| | | | ||| || || Sbjct 120807 CTCAACATGAACATCTTCGAAACGATCTACTACGCTTCTATGGAGACCTCGATGGAGATC 120748 Query 20240 GCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTC 20299 ||||| ||| |||||||||||||||||| |||| ||||| || | |||||||| || Sbjct 120747 GCCAAGGAGCTGGGCCCGTACGAGACGTTCCAGGGATCGCCTGCCAGCAAGGGTATCTTC 120688 Query 20300 CAGCCGGACATGTGGGGCGTCAC--------TGAGAATG-AGTTTTGGAGCGCCCTCAAG 20350 ||| ||||||||||||||||| | | || | |||| || |||||| Sbjct 120687 CAGTTCGACATGTGGGGCGTCACCCCGTCTTCGGGCTTGTGGGATTGGGCTGCGCTCAAG 120628 Query 20351 G---TTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACC 20407 | | ||||||| ||||| | ||||||||| | ||||| || || ||||| || Sbjct 120627 GAGAACGTGATCAAG---CACGGCATCCGCAACTCGCTCCTCGTGGCTCCGATGCCCACT 120571 Query 20408 GCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATC 20467 || ||||| || ||||| |||| ||||| ||| | |||||||||||||| | ||||| Sbjct 120570 GCGTCGACGGCTCAGATTTTGGGCAACAATGAGTCCATCGAGCCGTACACGTCGAACATG 120511 Query 20468 TACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGAC 20527 ||| || || ||||| ||||||||| || || |||||| |||| | || Sbjct 120510 TACAACCGCCGCGTGCTGGCTGGTGAGTTCACGATCGTGAACAAGTACCTCATGAAGGAG 120451 Query 20528 TTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGG 20587 || || | | || ||| |||| | | || | ||| | | ||| || Sbjct 120450 CTGATCGAGCTGGGCATCTGGACGCCTGAGGTGCGCAACCAGATTCTGGCTGACGGTGGC 120391 Query 20588 AGCGTCCAGGCATTGGATATCC--CCCAGA--ACCTCAAGGACATTTACAGGACCGTATG 20643 ||| || | | || |||| || || | ||||||| | |||| ||| || || Sbjct 120390 TCCGTGCA-GAAGGTGAAATCCATTCCGGACCAGGTCAAGGAGAAGTACAAGACGGTGTG 120332 Query 20644 GGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCA 20703 ||| ||| |||||| | | | ||| || |||| || || ||||||||||| ||| Sbjct 120331 GGAGATCAAGCAGAAGGCCGTGTTGGACCTGTCGGCGGACCGTGGCGCCTACATTTGCCA 120272 Query 20704 GTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGA-GCCTGGCGAAGCTGAGCTCCATGC 20762 | ||||||||| || | ||| | | |||| | | || ||||||| ||||||| Sbjct 120271 GAGCCAGTCGCTGAACATTCACATTGCCGACCCGACGATTAGC-AAGCTGACGTCCATGC 120213 Query 20763 ATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCG 20811 | | |||| |||| | |||||||||||||||||||||||||| |||| Sbjct 120212 ACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTACTACATGCG 120164 Score = 495 bits (548), Expect = 4e-135 Identities = 1173/1742 (67%), Gaps = 54/1742 (3%) Strand=Plus/Plus Query 78193 CGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGAC 78252 |||| |||||||||||||||||||| ||||||||||| |||| | |||||| || | Sbjct 120164 CGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTC 120223 Query 78253 AGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTAC 78312 |||||| | |||||| | ||| ||||| ||||||||| |||| ||||| Sbjct 120224 AGCTTGCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAG 120283 Query 78313 GCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGG 78372 || || ||||| |||| || ||| | || | ||| ||| |||||||| | ||| | Sbjct 120284 GCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTG 120343 Query 78373 TAAATGGCCTTCAGCTCTTCCTGGATG---TCCAGCGCTTGTACGCTCCCACCGGCTCGC 78429 || | |||| | || ||| | ||| | || | || ||| |||||| | | Sbjct 120344 TACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAGCC 120403 Query 78430 ACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCT-GA--AGATCCCGGACC 78486 | ||| | || | | ||| ||||| || | || || || ||| | Sbjct 120404 AGAATCTGGTTGCGCACCTCAGGCGTCCAGA---TGCCCAGCTCGATCAGCTCCTTCATG 120460 Query 78487 AGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTC 78546 |||| | ||| | || |||||| || ||||| ||||| ||| ||||| | | Sbjct 120461 AGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGAC 120520 Query 78547 GTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATG 78606 ||||||||||||| | ||| ||||| |||| ||||| || ||||| || || ||||| Sbjct 120521 GTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATC 120580 Query 78607 GGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGA---CCTTTAG---- 78659 || || || || || || || || | || ||| |||||| || |||| || Sbjct 120581 GGAGCCACGAGGAGCGAGTTGCGGATGCCGTGC---TTGATCACGTTCTCCTTGAGCGCA 120637 Query 78660 GCCG--TCCCAAAATTC---ATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCC 78714 ||| ||||| || | | || | || ||||||||||| || | ||||||| Sbjct 120638 GCCCAATCCCACAAGCCCGAAGACGGGGTGACGCCCCACATGTCGAACTGGAAGATACCC 120697 Query 78715 TCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT 78774 | | || ||||| |||| |||||||||||| | ||| ||||||||||| || ||| Sbjct 120698 TTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CAT 120756 Query 78775 ----GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCG 78830 | ||| || | |||| ||| | | ||||||||| | ||||||| || || Sbjct 120757 CGAGGTCTC---CATAGAAGCGTAGTAGATCGTTTCGAAGATGTTCATGTTGAGTTCACG 120813 Query 78831 CGCCTT-GGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGA 78889 || | || ||| ||||||| | | | | || || |||| || || ||||||| Sbjct 120814 GGCTTGCGGGCTC-TCGAACGCATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGA 120872 Query 78890 CGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAA 78949 |||| ||| | | ||| ||||||||||||||| ||| || ||| |||| ||||| Sbjct 120873 CGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGT 120932 Query 78950 AGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATT 79009 |||| || ||||| ||||| ||| || || || ||| ||||||||||||| | Sbjct 120933 AGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCT 120992 Query 79010 TGGCGAAATCAAA-ATGATTTCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTG 79068 | | | | || | |||| | || | || ||| || || ||||||||| Sbjct 120993 TCTGGTAGTTGAACACTCCATCCTCC-ACAAACTTGGGGAGGGCCACAGACGCCAGGTTG 121051 Query 79069 CACACGGCCGTCTCGTCCGGGCTA-GAAACCTCGATGATTTCTGTGCACAAATTAGACGA 79127 ||||| ||| ||| || |||| | | ||| || || || |||||| || ||| Sbjct 121052 CACACCGCCACCTCATC-GGGCGACGTGTACTCCATAATCTCGCAGCACAAGTTGCTCGA 121110 Query 79128 CTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACAT 79187 ||| ||||||| ||||| |||||| ||| ||| ||||||||||| ||| Sbjct 121111 GCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCAT 121170 Query 79188 GTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCG 79247 | ||||| || ||||||| ||| | || | | || ||| | | | |||| Sbjct 121171 GAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCATT 121230 Query 79248 GACAACCTTCTTGTAC---CGACCCTGTGCGACGTACGTCCGGTACA-ACTCGTTGAAAG 79303 || | ||||| | || |||| ||||| || ||||| | || | ||| Sbjct 121231 GAT---CGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGTC-TCGAACT 121286 Query 79304 CCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCT 79363 | || || || ||| || || ||| ||| | ||||| | ||| ||| | Sbjct 121287 CGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGC 121346 Query 79364 CGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGC 79423 ||| | || || || |||||| || || |||| |||||| || ||||||||||| Sbjct 121347 CGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGC 121406 Query 79424 GGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGG 79483 | || | ||||| ||| |||||| |||||||| || || || | | ||||| Sbjct 121407 GCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACGTCGG 121466 Query 79484 CGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGA 79543 |||||||||||||||| |||||||||||||| || ||||||||||| || ||||||| | Sbjct 121467 CGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCA 121526 Query 79544 CGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGT 79603 | || |||||||||| ||||| || | |||||||| | ||| |||| || |||| Sbjct 121527 CATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCGT 121586 Query 79604 TCGTCCCGTTGAT-TCG-TGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGC 79660 |||| ||| ||| | | ||| | | || || ||||| | ||| || || || | Sbjct 121587 TCGTGCCGCGGATGTAGCTGTTC--GTGGCGCGGATGTT-GTGCATACTAATGCCAATAC 121643 Query 79661 CCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCG 79720 | |||| ||||||||||||| |||||||| ||||||||| ||||| |||||||| |||| Sbjct 121644 CTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCG 121703 Query 79721 AGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGT 79780 ||||||||| ||| || | |||||| || ||||| ||| || ||| ||||||| Sbjct 121704 AGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCGGCGT 121763 Query 79781 TGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCT-CC 79839 | ||||| || |||||||||||||| |||||| | || ||| || || ||||| | | Sbjct 121764 TAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCATACGTGTGCA 121823 Query 79840 TTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTgg 79899 || ||| | ||| ||| | ||| || || | ||| |||||||||| | | |||| Sbjct 121824 GTGCCGC-CTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCATCTGCTGG 121882 Query 79900 gg 79901 || Sbjct 121883 GG 121884 >seq2561 Length=604796 Score = 228 bits (252), Expect = 9e-55 Identities = 571/849 (67%), Gaps = 29/849 (3%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| ||| | || |||||| | | ||||||| | ||||| | |||| Sbjct 370747 TGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACC 370806 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 ||||||| |||| || || | || |||||| || ||||||||| || ||||| | Sbjct 370807 TGAAGGACTGGGGGAACCTGACGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCAT 370866 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || || || || |||| || || | | |||||||| ||| || | Sbjct 370867 TCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCGATGAACTTCAGCAATGAGG 370926 Query 59773 TCCAGATTGCC-GAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCA 59830 | || | |||| ||||| || | ||||||| | ||| ||| || |||| ||||| Sbjct 370927 TGCA-AGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCG-CCATCGAGAACATCCA 370984 Query 59831 CTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGG 59890 ||| ||| ||||||||| ||||||| | || ||||||| | | ||||||| | Sbjct 370985 CTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGATCA 371044 Query 59891 TCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGC 59949 || | |||||||| |||||| |||| || || | | || || ||||| | Sbjct 371045 CTTGCTGCGTGCCATCGAGACGATCCCGTGC-GTGGAGAAGAAGGCCCGCTGGGCGCTCA 371103 Query 59950 AGTGG-ATGA--GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 ||||| ||| || || | || | | | ||||| | || || || ||||| Sbjct 371104 AGTGGTGTGACCCTCGTGTTTCGTCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGG 371163 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 | || || |||||||| || || ||||| | || ||||||||||| ||||| ||||||| Sbjct 371164 AGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCA 371223 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126 |||| || ||||| ||||| |||||||| || ||||||||||||| | || ||| | Sbjct 371224 TGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACT 371283 Query 60127 TTGCAGTGACGC-TCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGATA------TT 60179 | || ||| | | | || || | | || | || || || ||| | | Sbjct 371284 TCGC-GTGCCTCATGTACTCGAAGTTGGTGAACAA----GCTGCC--GGAGAGCCGCGTG 371336 Query 60180 CACAAGATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCC 60238 ||| ||| || | ||| |||| | | ||| ||||||| | | || |||| || Sbjct 371337 CACGCGATCGTGC-GTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCC 371395 Query 60239 ATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGA 60298 | || || || ||| || ||| ||| |||||||| |||| || || || Sbjct 371396 CGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGA 371455 Query 60299 CCGCCTCATGGCCCAGTTTGGAGAAGGACCA--ATTTACGGCGTGAATAACCCTTTCGAC 60356 |||||| || | | || | | ||| || ||| |||||| ||||| |||||| Sbjct 371456 CCGCCTGCTGTACTCACTGGGTGCA--TCCAAGATCTACAACGTGAAGAACCCGTTCGAC 371513 Query 60357 TGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGAT 60416 |||||||| | |||||| || | || |||||||||||||| |||||||| || || || Sbjct 371514 TGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAG 371573 Query 60417 TATTCAAAG 60425 || || ||| Sbjct 371574 TACTCCAAG 371582 >seq1300 Length=5041 Score = 228 bits (252), Expect = 9e-55 Identities = 571/849 (67%), Gaps = 29/849 (3%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| ||| | || |||||| | | ||||||| | ||||| | |||| Sbjct 2531 TGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACC 2472 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 ||||||| |||| || || | || |||||| || ||||||||| || ||||| | Sbjct 2471 TGAAGGACTGGGGGAACCTGACGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCAT 2412 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || || || || |||| || || | | |||||||| ||| || | Sbjct 2411 TCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCGATGAACTTCAGCAATGAGG 2352 Query 59773 TCCAGATTGCC-GAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCA 59830 | || | |||| ||||| || | ||||||| | ||| ||| || |||| ||||| Sbjct 2351 TGCA-AGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCG-CCATCGAGAACATCCA 2294 Query 59831 CTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGG 59890 ||| ||| ||||||||| ||||||| | || ||||||| | | ||||||| | Sbjct 2293 CTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGATCA 2234 Query 59891 TCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGC 59949 || | |||||||| |||||| |||| || || | | || || ||||| | Sbjct 2233 CTTGCTGCGTGCCATCGAGACGATCCCGTGC-GTGGAGAAGAAGGCCCGCTGGGCGCTCA 2175 Query 59950 AGTGG-ATGA--GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 ||||| ||| || || | || | | | ||||| | || || || ||||| Sbjct 2174 AGTGGTGTGACCCTCGTGTTTCGTCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGG 2115 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 | || || |||||||| || || ||||| | || ||||||||||| ||||| ||||||| Sbjct 2114 AGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCA 2055 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126 |||| || ||||| ||||| |||||||| || ||||||||||||| | || ||| | Sbjct 2054 TGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACT 1995 Query 60127 TTGCAGTGACGC-TCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGATA------TT 60179 | || ||| | | | || || | | || | || || || ||| | | Sbjct 1994 TCGC-GTGCCTCATGTACTCGAAGTTGGTGAACAA----GCTGCC--GGAGAGCCGCGTG 1942 Query 60180 CACAAGATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCC 60238 ||| ||| || | ||| |||| | | ||| ||||||| | | || |||| || Sbjct 1941 CACGCGATCGTGC-GTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCC 1883 Query 60239 ATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGA 60298 | || || || ||| || ||| ||| |||||||| |||| || || || Sbjct 1882 CGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGA 1823 Query 60299 CCGCCTCATGGCCCAGTTTGGAGAAGGACCA--ATTTACGGCGTGAATAACCCTTTCGAC 60356 |||||| || | | || | | ||| || ||| |||||| ||||| |||||| Sbjct 1822 CCGCCTGCTGTACTCACTGGGTGCA--TCCAAGATCTACAACGTGAAGAACCCGTTCGAC 1765 Query 60357 TGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGAT 60416 |||||||| | |||||| || | || |||||||||||||| |||||||| || || || Sbjct 1764 TGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAG 1705 Query 60417 TATTCAAAG 60425 || || ||| Sbjct 1704 TACTCCAAG 1696 >seq1932 Length=9237 Score = 208 bits (230), Expect = 8e-49 Identities = 553/826 (67%), Gaps = 29/826 (4%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| ||| | || |||||| | | ||||||| | ||||| | |||| Sbjct 813 TGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACC 754 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 ||||||| |||| || || | || |||||| || ||||||||| || || || | Sbjct 753 TGAAGGACTGGGGGAACCTGACGGACAACGAGCGCCACTTCATCAAGCACGTGCTAGCAT 694 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || || || || |||| || || | | |||||||| ||| || | Sbjct 693 TCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCGATGAACTTCAGCAATGAGG 634 Query 59773 TCCAGATTGCC-GAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCA 59830 | || | |||| ||||| || | ||||||| | ||| ||| || |||| ||||| Sbjct 633 TGCA-AGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCG-CCATCGAGAACATCCA 576 Query 59831 CTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGG 59890 ||| ||| ||||||||| ||||||| | || ||||||| | | ||||||| | Sbjct 575 CTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGATCA 516 Query 59891 TCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGC 59949 || | |||||||| |||||| |||| || || | | || || ||||| | Sbjct 515 CTTGCTGCGTGCCATCGAGACGATCCCGTGC-GTGGAGAAGAAGGCCCGCTGGGCGCTCA 457 Query 59950 AGTGG-ATGA--GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 ||||| ||| || || | || | | | ||||| | || || || ||||| Sbjct 456 AGTGGTGTGACCCTCGTGTTTCGTCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGG 397 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 | || || |||||||| || || ||||| | || ||||||||||| ||||| ||||||| Sbjct 396 AGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCA 337 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126 |||| || ||||| ||||| |||||||| || ||||||||||||| | || ||| | Sbjct 336 TGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACT 277 Query 60127 TTGCAGTGACGC-TCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGATA------TT 60179 | || ||| | | | || || | | || | || || || ||| | | Sbjct 276 TCGC-GTGCCTCATGTACTCGAAGTTGGTGAACAA----GCTGCC--GGAGAGCCGCGTG 224 Query 60180 CACAAGATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCC 60238 ||| ||| || | ||| |||| | | ||| ||||||| | | || |||| || Sbjct 223 CACGCGATCGTGC-GTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCC 165 Query 60239 ATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGA 60298 | || || || ||| || ||| ||| |||||||| |||| || || || Sbjct 164 CGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGA 105 Query 60299 CCGCCTCATGGCCCAGTTTGGAGAAGGACCA--ATTTACGGCGTGAATAACCCTTTCGAC 60356 |||||| || | | || | | ||| || ||| |||||| ||||| |||||| Sbjct 104 CCGCCTGCTGTACTCACTGGGTGCA--TCCAAGATCTACAACGTGAAGAACCCGTTCGAC 47 Query 60357 TGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGA 60402 |||||||| | |||||| || | || |||||||||||||| |||| Sbjct 46 TGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGA 1 >seq2517 Length=327626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 159479 CGCTTCTGGGGGTCGCTCAGGACCTCATAGGCCTCCTGGACTTTCTTGAACTTCTCGGCG 159538 ||||||| ||||| ||| |||||||||||| || || ||||||| ||| | | Sbjct 40011 CGCTTCTCCGGGTCAGACAGCACCTCATAGGCCACCGTGATGGTCTTGAAGAGCTCCGGG 39952 Query 159539 TCACCGCCCTTGTCGGGGTGGTGCTCGCGGGCAAGTTTGCGGTACGCCTTTTTGATGTCG 159598 || || |||||||| ||||||| || | | || || || ||||||||||| ||||| ||| Sbjct 39951 TCGCCACCCTTGTCTGGGTGGTTCTTGAGCGCCAGCTTACGGTACGCCTTCTTGATCTCG 39892 Query 159599 G 159599 | Sbjct 39891 G 39891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548507137501440