Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq2560 138 5e-28 >seq2560 Length=600116 Score = 138 bits (152), Expect = 5e-28 Identities = 330/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 65907 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 65966 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 91034 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 91093 Query 65967 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66026 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 91094 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 91153 Query 66027 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66086 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 91154 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 91213 Query 66087 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66146 ||||| |||||||| || || || || || ||| || | | ||||| ||||| | Sbjct 91214 CCGCGTGCCGAGCTTGAGGGGGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATTA 91273 Query 66147 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 66203 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 91274 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 91331 Query 66204 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 66263 ||| | |||||| | ||| ||||| | |||| | || ||| | ||| | Sbjct 91332 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 91387 Query 66264 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66323 || |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 91388 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 91447 Query 66324 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 66383 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 91448 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 91507 Query 66384 AACAAGCTGGCCCCGCC 66400 ||||||||||| |||| Sbjct 91508 AACAAGCTGGCGTCGCC 91524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242414789148752