Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq2526 102 3e-17 >seq2526 Length=360848 Score = 102 bits (112), Expect = 3e-17 Identities = 190/274 (69%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| || || || | |||||||||| || | | | | Sbjct 119787 CCATGCACATGTGGGTGGCCTCGATCACAACGGCCACGCCCTTGGGCTCAATGACGCCCA 119846 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACA 31124 | ||| |||||||| | ||||| || |||||||| ||||| ||||| | | | | Sbjct 119847 TGATGGCGGTGGCGATCTGCTTGGTGAGGCGCTCCTGCACCTGCAGACGGCGCGAAAAGA 119906 Query 31125 TGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGA 31184 || || ||| | |||||||| ||||||| | ||||| || ||||| | || Sbjct 119907 CCTCGCTCACGCGCGCGAGCTTGCTGAGGCCCAGCACTTTGCCGTTGGGGATGTAACCGA 119966 Query 31185 TCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGGAT 31242 | ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | ||| Sbjct 119967 T-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCGAT 120024 Query 31243 GTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||| ||||| | ||||||| ||| || | |||| Sbjct 120025 GTCCCGCACGATGACCATCTCGTCGTGGTCCTCC 120058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187283870811136