Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2569 178 3e-39 seq2529 158 3e-33 seq2563 136 8e-27 seq2565 109 1e-18 >seq2569 Length=732260 Score = 178 bits (196), Expect = 3e-39 Identities = 180/232 (78%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | ||| || || |||||||||||||| Sbjct 55277 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 55218 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 55217 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 55158 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 55157 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 55099 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| ||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 55098 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTTC 55047 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | ||| || || |||||||||||||| Sbjct 55505 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 55446 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 55445 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 55386 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 55385 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 55327 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 55326 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 55279 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | ||| || || |||||||||||||| Sbjct 55733 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 55674 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 55673 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 55614 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 55613 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 55555 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 55554 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 55507 >seq2529 Length=382763 Score = 158 bits (174), Expect = 3e-33 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| ||| || |||||||||||||| Sbjct 60581 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTC 60640 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 60641 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 60700 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || || Sbjct 60701 ATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 60759 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105 || | ||||||||||| |||||||||||||| ||||| |||||||| || || Sbjct 60760 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTGAT 60813 Score = 152 bits (168), Expect = 1e-31 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 60125 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 60184 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 60185 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 60244 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || || Sbjct 60245 ATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 60303 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| |||||||||||||| ||||| |||||||| Sbjct 60304 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 60351 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 59668 ACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 59727 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 59728 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 59787 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || | Sbjct 59788 GATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCA 59846 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||||||||| |||||||||||||| || || |||||||| Sbjct 59847 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 59895 Score = 147 bits (162), Expect = 5e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 59897 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 59956 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 59957 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 60016 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || || Sbjct 60017 ATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 60075 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| |||||||||||||| || || |||||||| Sbjct 60076 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 60123 Score = 143 bits (158), Expect = 6e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 60353 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 60412 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 60413 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 60472 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||| || ||| | ||||| | ||| || | || || Sbjct 60473 ATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCTGACGGCTCCAC 60531 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| |||||||||||||| || || |||||||| Sbjct 60532 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 60579 >seq2563 Length=678508 Score = 136 bits (150), Expect = 8e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 614519 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 614578 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| |||||| || |||||||| ||||| || ||| || || | || Sbjct 614579 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 614637 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 614638 AATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 614697 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 614698 GATCTGCAT 614706 Score = 109 bits (120), Expect = 1e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || || ||||||||||| | Sbjct 195490 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGA 195431 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| || || || ||||| ||||||| ||| || |||||| Sbjct 195430 AAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCA 195376 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| ||||| || ||||| || | || || ||||||| | || || Sbjct 195305 TACCCTCCTTGTCCTGGATTTTCTGCTTG-ACATTGTCAATGCTGTCCGACGGCTCCACG 195247 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 195246 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTTC 195196 >seq2565 Length=689251 Score = 109 bits (120), Expect = 1e-18 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||||||||| || || | |||||| |||||||| ||| ||| Sbjct 21171 GGGAAGCCCTCGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCG 21112 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||||||||| ||||| || || | || ||||| || |||| ||||||||| Sbjct 21111 TTGGGGCCGCACAGACCGTAACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGC 21052 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 |||||| ||||||| || || || ||||| || || | ||||||||| Sbjct 21051 AGAATCATACCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 21004 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| || | ||| ||| || Sbjct 22029 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAGG 21970 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 ||| ||| |||||||||||||||||||| ||||| || || | |||||| || ||| Sbjct 21969 TGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTGC 21910 Query 316282 TTCCAAAC 316289 ||||| || Sbjct 21909 TTCCACAC 21902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046704652372704