Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2569 167 2e-36 seq2529 165 8e-36 seq2563 154 1e-32 >seq2569 Length=732260 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | ||||| |||||||| ||||||||| ||||| |||||| Sbjct 55733 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 55674 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 55673 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 55614 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| |||||| ||| | | | | ||| | |||||| Sbjct 55613 ATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATGGAGTCCGAAGGCTCCAC 55555 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| || || || ||||||| |||||| ||||| ||||||||| Sbjct 55554 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 55506 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| |||||||| ||||||||| ||||| |||||| Sbjct 55278 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 55219 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 55218 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 55159 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| ||| | | | | ||| | ||||| Sbjct 55158 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATGGAGTCCGAAGGCTCCA 55100 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| ||| || || || ||||||| |||||| ||||| ||||||||||| Sbjct 55099 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 55048 Score = 159 bits (176), Expect = 3e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| |||||||| ||||||||| ||||| |||||| Sbjct 55506 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 55447 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 55446 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 55387 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| ||| | | | | ||| | ||||| Sbjct 55386 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATGGAGTCCGAAGGCTCCA 55328 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| || || || ||||||| |||||| ||||| ||||||||| Sbjct 55327 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 55278 >seq2529 Length=382763 Score = 165 bits (182), Expect = 8e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 60124 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 60183 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 60184 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 60243 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||||| |||||| ||| | | | | ||| || ||||| Sbjct 60244 GATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 60302 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| || ||||| || ||||||| ||||| ||||| ||||||||| Sbjct 60303 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 60352 Score = 159 bits (176), Expect = 3e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 59896 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 59955 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 59956 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 60015 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||||| |||||| ||| | | | | ||| || ||||| Sbjct 60016 GATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 60074 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| || ||||| || ||||||| ||||| || || ||||||||| Sbjct 60075 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 60124 Score = 159 bits (176), Expect = 3e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 60352 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 60411 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 60412 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 60471 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||||| |||||| ||| | | | | ||| || ||||| Sbjct 60472 GATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCTGACGGCTCCA 60530 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| || ||||| || ||||||| ||||| || || ||||||||| Sbjct 60531 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 60580 Score = 159 bits (176), Expect = 3e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||||| |||||||| |||||||| ||||| |||||| Sbjct 60580 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCT 60639 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 60640 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 60699 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||||| |||||| ||| | | | | ||| || ||||| Sbjct 60700 GATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 60758 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| || ||||| || ||||||| ||||| ||||| |||||||| || Sbjct 60759 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 60810 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 59669 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 59728 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 59729 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 59788 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||||| |||||| ||| | | | | ||| || |||||| Sbjct 59789 ATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 59847 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || ||||| || ||||||| ||||| || || ||||||||| Sbjct 59848 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 59896 >seq2563 Length=678508 Score = 154 bits (170), Expect = 1e-32 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 614517 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 614576 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||| | |||| || ||||||||| |||||| ||||| || | Sbjct 614577 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTT-GACATTG 614635 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | ||||| || ||| || |||| ||| || || || |||||||| ||||| || Sbjct 614636 TCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 614695 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 614696 AAGATCTGCATG 614707 Score = 131 bits (144), Expect = 2e-25 Identities = 102/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| |||||||||||||||||||||||||| ||||| Sbjct 195492 CCACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCC 195433 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | | Sbjct 195432 GAAAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGG 195373 Query 41753 GG 41754 || Sbjct 195372 GG 195371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462289113811200