Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq215 147 5e-30 seq2952 116 8e-21 seq74 113 1e-19 seq4115 91.5 3e-13 >seq215 Length=35674 Score = 147 bits (162), Expect = 5e-30 Identities = 678/1060 (64%), Gaps = 57/1060 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||| | ||| ||| || Sbjct 20105 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAG 20164 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| |||||||||||||| ||||| ||||| || || | |||||| || || Sbjct 20165 GTGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTG 20224 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || | |||| || | | ||||| |||| || || | ||| Sbjct 20225 CTTCCACACCTGGCCACTCGTGGGCTCAACCTCACCCGTCAGCATTTTGATCATGGTCGA 20284 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGG-------AGTTCAGCGATACCT 319222 || || |||||||| || | ||| |||| | | || || || ||| Sbjct 20285 CTTTCCGGCACCGTTGGGTCCAAGCACGGCGATACGGCTCGACAAAGCGCA-CGTCACC- 20342 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | | | |||| || | | | || || || || |||| | || ||| Sbjct 20343 --GAAATGTTGTTGATCGACG----GCTTCGGGGTGCCAGGGTACTGGTACGA-ACAGTT 20395 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 ||| || ||||||| |||| |||| | | ||||| |||||||| || Sbjct 20396 CGTCAGACGAATGATGGGTTTACCCTTGTTCTTGATGTCGGCAAGGAAGCCGGGCTCCGG 20455 Query 319341 GAACTTC-----CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||| | ||||| ||| | ||| || ||||||| | | || || Sbjct 20456 GAACGTGAACTTCACGTTGTCA--GACTCC---AGCTCGTAGTAGGCCTTGGCCTCAGGC 20510 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 || || |||||| | || || || |||||||| |||||||||| | | ||| Sbjct 20511 TTCTGCTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGCGTC---TCG 20567 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || || || || ||| || |||| |||||||||||| |||||||| ||||| || | | Sbjct 20568 TAGTGAATGATGTTGGTACAGACAGTGTCGAGGAACCCAGAGTCGTGCGACACCATGATG 20627 Query 319516 CACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAA 319575 | || |||| | ||| | ||||||| | || ||| ||||| ||| Sbjct 20628 CTCGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCC 20687 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 | |||||| |||||||| ||||| ||||| | | ||| ||| | ||||| ||||| ||| Sbjct 20688 AAATGGTTCGTCGGCTCATCAAGGAGCAGGATGTCTGCCTTCTGCAGCATGGCACGAGCA 20747 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 319695 || | |||||||| ||||| || || ||||| || | || ||| || Sbjct 20748 AGCTCAAGTTTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGC 20801 Query 319696 ATATC------AAAGCCAACCGATTCTAGAGTAGTTAC-GATCTTTTCACGAGACCAAAT 319748 || || ||||| || | | || || || || | || || |||| | | Sbjct 20802 ATCTCCGGGGTGAAGCCCACGCTTCCGAGCGT-GTCACACACCTCGTCGCGAG---GAGT 20857 Query 319749 GTT-TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGG 319807 ||| ||| | || | || || || |||||||| | | | | | || |||| Sbjct 20858 GTTCTTCAGGTCCTCATCCACCA--GG--ATGAAGTCCACCACGGACAACTCAGCCTCGG 20913 Query 319808 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCC 319865 | | | || | ||| || ||| | |||| |||| | | | || |||||| || Sbjct 20914 AAGCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGAGCGGC--TGGGGAAGCC 20971 Query 319866 TTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCC 319925 || ||||| ||||| |||||||||||||| || || ||||| ||||| || || Sbjct 20972 CTCGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCC 21031 Query 319926 ACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTT 319985 ||||||||||| |||| || || |||| | | || | ||||||||| ||||| | Sbjct 21032 GCACAGACCGTAACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGCAGAATCAT 21091 Query 319986 TCCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 ||||| || || || || ||||| || | ||||| ||| Sbjct 21092 ACCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 21131 >seq2952 Length=1496 Score = 116 bits (128), Expect = 8e-21 Identities = 607/943 (64%), Gaps = 37/943 (4%) Strand=Plus/Plus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| ||||| | | ||| ||||| | |||||||||||||||| ||| | ||||| Sbjct 395 GTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTG 454 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 ||| | ||||| | ||| ||| ||| | |||||| | ||| || | | Sbjct 455 GACGGCCGAGGAGCTGGACCTGGT-GCACGACCTGAAGGACTGGGG---GAACCTGACGG 510 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || |||| || || |||||||| ||| | |||| || ||||| | | ||| || || | Sbjct 511 ACAACGAGCGCCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATCG 570 Query 229937 TGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 229996 ||| || || ||| || ||||| || || || || || ||||| || | Sbjct 571 TGAACGAGAACCTGGCGATGAACTTCAGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCT 630 Query 229997 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCG 230056 | || | | ||| | || ||| ||||| || || || | ||||| |||| Sbjct 631 TCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCG 690 Query 230057 ACGCGCTTATTTC-----CGACGAGCAAGAACGGAACGAGCTTTTTGA-TGCCATTGAAA 230110 || || || || || || | | ||| ||| || ||| || |||||| || | Sbjct 691 ACACG--TACATCAAGGACGCCGTGGA-GAA-GGATCG--CTTGCTGCGTGCCATCGAGA 744 Query 230111 ACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAAT 230170 |||||| || | || ||||| ||||| | || ||| || ||| || | Sbjct 745 CGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTGTTT 804 Query 230171 CGTT-TGCC--GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 ||| | || |||||||| | || | | || || || ||| | || || || Sbjct 805 CGTCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTT 864 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 |||||| ||||||| ||||| ||| || | |||||||| || | | || | Sbjct 865 CCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGA 924 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCA 230346 ||||| ||||||| || |||||||| | || | |||| || || | ||||| || Sbjct 925 ACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCCTCATGTACTCG 983 Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGA 230405 ||| | ||||||||| || ||| || || | ||| | || || || | Sbjct 984 AAGTTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGT 1042 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTG 230464 | || | |||||| | | ||| | | || || | || || ||||||||| ||| Sbjct 1043 GATTGAGCACGAGTTCGTGAGCGACTCGCTCCCC-GTGGAGCTGATCGGCATGAACTCTG 1101 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT---T 230521 || ||| | ||||||||||| ||||| ||||||||| | | |||| ||| | Sbjct 1102 CGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGTGCAT 1161 Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 | ||| | |||||| |||||||| || | | ||||| | || ||||| || | Sbjct 1162 CCAAGA---TCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGG 1218 Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAGGCCTGGTGT-GATGAA 230639 | ||||||||||||||||| ||||| || | || || || ||| ||||||| | || Sbjct 1219 GCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTACTCCAAGG-CTGGTGTGGGTGTC 1277 Query 230640 GC--CCGAAGACAATATTTTTGCTATTGACGATGATTTTTAAG 230680 || |||| ||| | | || || | |||| || ||||||| Sbjct 1278 GCGGCCGAGGACCAGGTGTTCACTCTGGACGCAGACTTTTAAG 1320 >seq74 Length=59868 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 75 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 134 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 135 CCCACGGTGGGC 146 >seq4115 Length=1221 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 323 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 264 Query 165771 CCACG 165775 ||||| Sbjct 263 CCACG 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057762305059760