Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq366 194 2e-44 >seq366 Length=43169 Score = 194 bits (214), Expect = 2e-44 Identities = 394/585 (67%), Gaps = 0/585 (0%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| |||||||| || || || |||||||| || | ||||| || || || || Sbjct 17062 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17003 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | | || | | || || || | || ||||| | |||||| || ||||| Sbjct 17002 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 16943 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || |||||||| ||||||||||||||| ||| || || | ||||||| Sbjct 16942 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 16883 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCC 145923 ||||||||||||| ||||| | | |||||| || ||||| ||||| || ||| || Sbjct 16882 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 16823 Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCT 145983 || |||||||| || | | |||| || | | | |||||| | | || Sbjct 16822 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGA 16763 Query 145984 ATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTAC 146043 |||| || ||||||||||||||||| || ||| || || | |||| |||| Sbjct 16762 ATCACCTCAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTCCGTGTAC 16703 Query 146044 GCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG 146103 ||| || || || | ||||||||| |||||||| || || ||||| || || | Sbjct 16702 CTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTCGCGC 16643 Query 146104 TGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163 | || || | | | | | || |||||||| || |||||||||| | | | Sbjct 16642 GACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTGAATG 16583 Query 146164 CCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCG 146223 || || ||| | | | |||| || || |||||||| |||||||| || Sbjct 16582 TCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTCCTCC 16523 Query 146224 AGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 || || | |||||| || | |||||| || ||||| |||||| Sbjct 16522 GCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAAC 16478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590043224630080