Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_001884.1 Length=134416 Score E Sequences producing significant alignments: (Bits) Value seq248 141 8e-29 seq4 116 3e-21 seq2 87.8 2e-12 >seq248 Length=30296 Score = 141 bits (156), Expect = 8e-29 Identities = 268/385 (70%), Gaps = 11/385 (3%) Strand=Plus/Plus Query 94287 GAGCCATTCCTTTTCGTTCTCATCAGTAAGGATAACCGGCATCCGATCATGGATGTCTTC 94346 |||||||||| ||| | |||| ||||||||||||||| |||| |||||||||||| Sbjct 11805 GAGCCATTCCGATTCATCCTCAGGCCGAAGGATAACCGGCATACGATTATGGATGTCTTC 11864 Query 94347 CATAAGCTCATTAGGCTTTGTTGTAATGATTGTGCAAGTGTATAAAGGATTGCCTTCT-G 94405 ||| || ||| || | ||||||||||| ||||| || | |||||||||| | Sbjct 11865 CATTAGACTATTTGGTTCGGTTGTAATGATGGTGCACGTACTCAGTTTATTGCCTTCTGG 11924 Query 94406 GTGTGTTCCACTTTTCGTATAAGCCTGCAAAAGCGAAGAGATTGGACGAT--TTAAGTTT 94463 || || |||| | ||||| | ||| |||| | ||| | | || | || || | Sbjct 11925 GTCTG-TCCAGGTATCGTACAGGCCAGCAAGCGAGAATA-AGCGGTC-ATCCTTCATCAG 11981 Query 94464 AATCCGCATAGGAATCTTAGTCTTTGGATCAAGGCGTTTCCATTCATAAAAACTGTCAGC 94523 ||| |||||||| ||| ||| | || ||| ||| |||||||| | || | Sbjct 11982 AATACGCATAGGTTGCTTGGTCGATCCTTCCTTGCG---CCACTCATAAAATCCGTTCGT 12038 Query 94524 CGGTATGATACAACGTTTGCTTACGAGC-GGCTTTCGAAAGCTGGGTTTCTCGGACAATG 94582 ||| ||||||||||||||| || | | | || || || || ||| |||| || | Sbjct 12039 CGGGATGATACAACGTTTGGAACTGATCAGACGTTTAAAGGCCGGCTTT-TCGGCTAACG 12097 Query 94583 TTTCAGCACGGGCATTAATCATTTTATAGCCGATCTTTTCGTCTTTAGCCCATGGAGGGA 94642 | ||||| || || |||||||| |||| || ||||| || || || ||||| || | Sbjct 12098 TCTCAGCCCGAGCGTTAATCATCTTATTACCAATCTTATCATCCTTGGCCCAAACGGGTA 12157 Query 94643 TAAGACCCCATCTAAGTTTGCCCAG 94667 ||||||||||| ||| |||||| Sbjct 12158 CAAGACCCCATCGGAGTGAGCCCAG 12182 >seq4 Length=484832 Score = 116 bits (128), Expect = 3e-21 Identities = 238/345 (69%), Gaps = 13/345 (4%) Strand=Plus/Plus Query 94315 AGGATAACCGGCATCCGATCATGGATGTCTTCCATAAGCTCATTAGGCTTTGTTGTAATG 94374 || || || ||||| ||||| |||||||| ||||||| ||||| | || |||||| Sbjct 365456 AGAATGACTGGCATACGATCGTGGATGTCCGCCATAAGACGGTTAGGTTCAGTAGTAATG 365515 Query 94375 ATTGTGCAAGTGTATAAAGGATTGCCTTCTGGTGTGTTCCACTTTTCGTATAAGCCTGCA 94434 || |||||||| | | || |||||||| |||| | || |||| ||| ||| Sbjct 365516 ATAGTGCAAGTTGAAACCTTTTTACCTTCTGGATCAATCCAAGTATCATATAGGCCAGCA 365575 Query 94435 AAAGCGAAGA--GATTGGACGATTTAAGTTTAATCCGCATAGGAATCTTAGTCTTTGGAT 94492 | | ||||| || | | ||| | | ||||||||| || ||| | |||| Sbjct 365576 AGCGAGAAGATGGAGTCATC--TTTCATTAAAATCCGCATTGGTTGCTT----TACGGAT 365629 Query 94493 CAAGGCGTTT-CCATTCATAAAAACTGTCAGC-CGGTATGATACAACGTTTGCTTACGAG 94550 | | | ||| |||||||||||| | ||| || || |||||||| ||| || Sbjct 365630 CCATCCTTTTTCCATTCATAAAATC-CCGAGCATGGGATAATACAACGCTTGGAACTGAT 365688 Query 94551 C-GGCTTTCGAAAGCTGGGTTTCTCGGACAATGTTTCAGCACGGGCATTAATCATTTTAT 94609 | ||| || || ||| |||||||| | | |||||| |||||||| |||||||| |||| Sbjct 365689 CAGGCGTTTAAAGGCT-GGTTTCTCTGTGAGTGTTTCTGCACGGGCGTTAATCATCTTAT 365747 Query 94610 AGCCGATCTTTTCGTCTTTAGCCCATGGAGGGATAAGACCCCATC 94654 ||| || ||||| || || ||||| ||| | |||||||||| Sbjct 365748 TGCCTATTTTTTCATCCTTGGCCCAATTAGGAACTAGACCCCATC 365792 >seq2 Length=712559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/293 (67%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 123905 GATTGGATGAAGCTTAAAGAAGATGTAATGAAATATGGTCTTTATCATTCCTATAGACAA 123964 ||||||| |||||||| | || ||| || |||| || |||||| ||||| | Sbjct 469252 GATTGGAAACAGCTTAAATCTAAAGTGATGGAAAATGGCCTCTATCATGCCTATCGCATG 469311 Query 123965 GCTATTGCGCCTACGGGAAGCATCTCATATGTTCAATCATCTACAGCAGGTGTAATGCCA 124024 |||||||| || || | ||||||||| ||| | ||| | ||| | |||||||||| Sbjct 469312 GCTATTGCTCCAACAGCAAGCATCTCTTATATCCAAAATGCAACATCCAGTGTAATGCCC 469371 Query 124025 ATTATGGAGAGAATTGAGGAACGTACATACGGAAACAGTAAGACATATTATCCGATGCCA 124084 ||| | || ||||||| ||| || || | || | || |||||||||||||| Sbjct 469372 ATTGTAGAACAAATTGAGACACGAACCTATGCCAATTCAACCACGTATTATCCGATGCCC 469431 Query 124085 GGTTTATCGGCTCAGAATTGGTTCTTCTATAAGGAA---GCATACGACATGGATATGTTT 124141 ||| | || || |||||||| | || || || | |||||| || Sbjct 469432 TATTT---GCAAAAGGATAATGTCTTCTATTACAAATCTGCGTATCAGATGGATCAATTC 469488 Query 124142 AAGGTAGTTGATCTTATTGCAACAATTCAGCAGCACGTCGACCAAGGGATTTC 124194 || || ||||| | ||||| ||||||| ||| || |||||||| || || Sbjct 469489 AAAGTGATTGATTTGATTGCGGAGATTCAGCCGCATGTGGACCAAGGAATCTC 469541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429982544319944