Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq11 116 4e-22 seq5 98.7 1e-16 seq19 80.6 3e-11 >seq11 Length=216871 Score = 116 bits (128), Expect = 4e-22 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14529 GGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGC 14588 || ||||| |||||||||||||| ||||||||||||||||||||| | |||||||| Sbjct 204577 GGTACAGTGAAATGGTTTAACGCGGATAAAGGATTTGGCTTTATCGAAACTGAAGAAGGA 204636 Query 14589 AAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAA 14648 | ||| | |||| ||| ||| ||||| ||| || || | |||||| | |||||| Sbjct 204637 ACAGACGTATTCGTTCATTTCAGTGCAATTCAAGGCGACGGCTACAAATCTTTGGATGAA 204696 Query 14649 GGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAGTCAATATC 14708 || ||| || ||||||| || ||||| | ||||| | ||||| | || | Sbjct 204697 GGACAACGCGTCCAATTTGAAGTAACTCAAGGTAACCGTGGACCACAAGCTGAGAACGTT 204756 Query 14709 ACAAAAGCATAATTATATT 14727 || |||| |||||||||| Sbjct 204757 ACTAAAGTTTAATTATATT 204775 >seq5 Length=386383 Score = 98.7 bits (108), Expect = 1e-16 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 14526 AATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTA--TCACTTCAGAAG 14583 || || ||||| ||||||||||||||||| ||||| | |||||||| ||| || |||| Sbjct 248795 AAAGGTACAGTTAAATGGTTTAACGCAGAAAAAGGCTATGGCTTTATTTCAGTT--GAAG 248852 Query 14584 AAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTG 14643 ||| | || | |||| || ||||| ||||||||| || || || ||| || | | Sbjct 248853 GCGGCGAGGACGTATTCGTACATTTCTCCGCAATCCAAGGCGACGGCTTTAAAACATTGG 248912 Query 14644 ATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAG 14700 | ||||||||| || ||||| || | || || | ||||||| |||||||| Sbjct 248913 AAGAAGGTCAAGCGGTAGAATTCGAAATCACTGATGGAAACCGTGGTCCTCAAGCAG 248969 >seq19 Length=114107 Score = 80.6 bits (88), Expect = 3e-11 Identities = 118/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGA 14593 |||||||||||| |||||||| ||||| | || || || | ||||| ||| || Sbjct 83764 AGTAAAATGGTTCAACGCAGAAAAAGGTTACGGTTTCATTGAAACTGAAGACGGCGGCGA 83705 Query 14594 TTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGTCA 14653 | |||| || ||||| ||||| ||||| || ||||||||| | | || |||||||| Sbjct 83704 CGTATTCGTACATTTCTCCGCAATTCAATCCGAAGGATTCAAAACTTTGGAAGAAGGTCA 83645 Query 14654 AAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAG 14700 | || ||||| || | | ||||| ||||| | ||||||| Sbjct 83644 ATCCGTAGAATTCGACATCGTCGAAGGCGCGCGTGGACCGCAAGCAG 83598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48451849723792