Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_003157.5 Length=43106 Score E Sequences producing significant alignments: (Bits) Value seq2 141 3e-29 >seq2 Length=712559 Score = 141 bits (156), Expect = 3e-29 Identities = 224/321 (70%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 917 TACTGGGATTCTTTTGATGCAGGAATTTACGTAGACGTTGTGACAGGAGAACCACTTTTC 976 ||||||||| | | |||| | ||||| || || || || || ||||| || ||||| Sbjct 270490 TACTGGGATACGTATGATCCGGGAATCTATGTGGATGTGAGCACCGGAGAGCCTCTTTTT 270431 Query 977 TCTTCAAAAGACAAATTTGAATCAGGTTGTGGTTGGCCAAGCTTTAGCCGCCCCATCAGC 1036 | | || |||| ||| || |||||||| ||||||||||||| |||||| ||| Sbjct 270430 GCCAGTGAGGATAAATATGATTCCGGTTGTGGCTGGCCAAGCTTTACCCGCCCAATCCTA 270371 Query 1037 CCAGACGTTGTCCGCTACAAGGAAGATAAGAGTTTCAATATGACGAGAACAGAAGTGCGC 1096 |||| |||||| ||| ||||||| | | |||||| | |||||||| || Sbjct 270370 GCAGATGTTGTCACTTACCGAGAAGATACTTCCTACCATATGATCCGGACAGAAGTCCGG 270311 Query 1097 AGCCGTTCAGGGAATTCTCATCTGGGGCATGTCTTTACTGACGGACCTAAAGACCAAGGC 1156 || || |||||| || ||| || || ||||| ||| || || || ||| ||||| Sbjct 270310 AGTCGCTCAGGGGATATTCACCTTGGTCATGTTTTTGACGATGGGCCCGCAGATCAAGGA 270251 Query 1157 GGCCTTCGTTACTGCATCAATAGCTTGTCTATTACCTTTATTCCAAAAGCTGATATGGAA 1216 ||| |||||||||||||||||| || ||| ||| ||||| || || ||| || Sbjct 270250 GGCAAGCGTTACTGCATCAATAGCGCTTCGATTCACTTCATTCCTTTGGCGGAGATGCAA 270191 Query 1217 GCTAAGGGCTATGGTTATTTA 1237 || || || || ||| || || Sbjct 270190 GCAAAAGGGTACGGTAATCTA 270170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137810150269632