Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_003216.1 Length=40834 Score E Sequences producing significant alignments: (Bits) Value seq10 91.5 4e-14 >seq10 Length=223028 Score = 91.5 bits (100), Expect = 4e-14 Identities = 195/289 (67%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 37647 GGACGATTAACTAAAGACCCTGATTTACGTTACACTCCAGCCGGCGCGGCTGTTGCGACT 37706 || || |||||| |||||||| ||||| || |||||| ||| | || || | Sbjct 111494 GGTCGGTTAACTCGTGACCCTGAGTTACGCTATACTCCAAACGGAGTTGCCGTAACTCAG 111435 Query 37707 TTTACGCTAGCAGTAAATCGTATGTTCACTAATCAAAACGGAGAACGAGAAGCAGATTTC 37766 ||||| | ||||| || | || || | |||| |||||||| ||||||||||| Sbjct 111434 TTTACTTTGGCAGTGGATAGACCTTTTACAAGTCAAGGGGGAGAACGTGAAGCAGATTTT 111375 Query 37767 ATTAATTGTGTTGTTTGGCGCAAACCAGCAGAAAACGT-TGCTAATTTCTTGAAGAAAGG 37825 || || |||||| || |||||||| ||| ||| |||| ||| ||||| Sbjct 111374 ATCCCGATCGTCACTTGGCGTCAATTAGCAGAAA-CGTGTGCCAATTATTTGCGTAAAGG 111316 Query 37826 AAGCATGGCGGGCGTTGATGGACGTGTTCAAACTCGTAATTATGAGGATAACGACGGTAA 37885 || | || | || || || || |||| ||||||||||||| ||||||| || || Sbjct 111315 CCGCTTAGCAGCAGTCGAAGGTCGAATTCAGGTTCGTAATTATGAGAATAACGAGGGAAA 111256 Query 37886 ACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAGTTCAATTCTTAGAA 37934 ||| || | || || || || ||||||| |||| || |||||| Sbjct 111255 ACGCGTCTATGTCACAGAAGTTATTGCTGACAATGTTCGTTTTTTAGAA 111207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130540143271104